FMO07108.5prime Sequence
1226 bp (1036 high quality bases) assembled on 2008-10-06
> FMO07108.5prime
CAGTCGACATGATGCAAGAGACCGGCAATCAAATGGGACAGACCCATATG
CACCAGCGGGTTCCTTTCAACGACACGGTTCTGAAGGACTATCATCTCAC
GAGCACCGATATCGAGAAGTTTGTAAAGCTATGGCAGGAGTACCAGATGA
AGAACATGACCCCTCAGGTGGATGAGTGCCAGGGCTATTGCCAGGGGGAA
ATATACAACTGGTTGCGAGCCTACAACAGCATCCATGGATACGTTTCGCT
GATGATTTGCATTTTCGGGACAATAGCAAACATCTTGAACATAATGGTCC
TGACCAGAAAGGAAATGGCCAAGACGCCCATAAATAATATACTTAAGTGG
CTGGCGGTGGCCGATATGTTTGTGATGCTGGAATATATACCCTATACATC
GTATCAGTATATCTATATGGGGCCAGGTGAAAAAGATTTGAGCTACACCT
GGGCGGTTTGTCTGCTGGTTCACATGCACTTCACGCAGATCCTGCATACG
ATTTCCATCGGACTGACTGTCACGCTGGCGGTGTGGCGGTATGTGGCTAT
CAGACATCCGAACGGGGGCTGTGCCAATTTCCTGCTAGCACATTCCCGGG
AGGCGATCCTCCTGCCCTTCATCCTGTCGCCGATCCTCTGCCTGCCCACG
TACTTTGTGTTCCAGGTGCGTGAGACGTACGACGTGGACAAGGTCAACTC
GGAGGCCATGTATCACGTTTACTTCGATAAGGACTCGGTGCTCTACAGAT
TCAACTTCTGGATACATTCCGTGCTCATCAAACTTCTGCCGTGCGGCATA
TTAATTGTGATCAGTGCAGTACTTATGCACGTTTTGTGCGAGGCATCGAG
ACGTCGCTTGAAGCTGAGGGATTACAACAATCCCGCCAATATGCCATCCA
GCTTAATCTGAATGAACCAAATCCAAGAAGCCTCCTCGCTGTGATCGCCG
AAACGATCGGACTACCCTTTTGCTGGGTTGCGTGCTGGTTTTGTTTCTGA
TTCCAGAGTTTCCGCAGGATTACTTGGTCTGCTGTCCGGAGTAATGGAGA
GTGCCTTCTTCGCCCTGCTATTCCGCCGTTTGGAAAGCTGAATGGATCTG
CTGGGCTTGATCAACCCGCCGTGGATCTGCTTACGTCTGATAGTCCAACA
GTTCGGACCCTTCGATGCGTTTAGGACCGCCCTTGGGCGAACCGGAAAGT
GACGAATAGTGGCCCGCGCTAACACG
FMO07108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13229-RC | 2361 | CG13229-RC | 391..1551 | 9..1159 | 5070 | 96.7 | Plus |
| CG13229-RB | 2509 | CG13229-RB | 539..1699 | 9..1159 | 5070 | 96.7 | Plus |
| CG13229-RA | 1557 | CG13229-RA | 152..1312 | 9..1159 | 5070 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11142684..11142929 | 254..9 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 11140800..11140997 | 748..551 | 945 | 98.5 | Minus |
| 2R | 25286936 | 2R | 11141677..11141851 | 428..254 | 860 | 99.4 | Minus |
| 2R | 25286936 | 2R | 11140530..11140717 | 930..745 | 840 | 98.9 | Minus |
| 2R | 25286936 | 2R | 11141210..11141339 | 553..424 | 620 | 98.5 | Minus |
| 2R | 25286936 | 2R | 11140165..11140351 | 1115..930 | 445 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:51 has no hits.
FMO07108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:12 Download gff for
FMO07108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13229-RA | 143..1274 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:48 Download gff for
FMO07108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13229-RA | 143..1274 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:27 Download gff for
FMO07108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13229-RA | 143..1274 | 1..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:27 Download gff for
FMO07108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11140531..11140713 | 749..929 | 98 | <- | Minus |
| 2R | 11140800..11140994 | 554..748 | 98 | <- | Minus |
| 2R | 11141210..11141336 | 427..553 | 98 | <- | Minus |
| 2R | 11141679..11141850 | 255..426 | 99 | <- | Minus |
| 2R | 11142684..11142937 | 1..254 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:12 Download gff for
FMO07108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7028036..7028218 | 749..929 | 98 | <- | Minus |
| arm_2R | 7028305..7028499 | 554..748 | 98 | <- | Minus |
| arm_2R | 7028715..7028841 | 427..553 | 98 | <- | Minus |
| arm_2R | 7029184..7029355 | 255..426 | 99 | <- | Minus |
| arm_2R | 7030189..7030442 | 1..254 | 98 | | Minus |
