FMO07111.5prime Sequence
908 bp (908 high quality bases) assembled on 2008-10-06
> FMO07111.5prime
CAGTCGACATGGCTAGCAACGTTGCTGCGCCACAAGCTTCAGCTGGAGGA
GATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAGACCGATAA
GGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCGAGGAACCA
ATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACGAGAAGACC
CGAATAAACAACAATCTGCAAGCCGTTTCCTGTCCACAATGCCAAACGGA
GTACACCATTGCATACCCGAATCTCTGGATTTTCGATAGGGCTTTGGAGC
TGACCAACGATCTTATCCTAACAAACTTATATAATTGCCTGGCCAATGTC
TTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGAGCAAAAAC
ATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAATAATTCAAT
CGGGAGACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCTCGGTAGTT
CTGATACTTGGACGCTTAATTCCCTGGGAAGATGCCCTGTTGCGCTTCAT
TAGAATATGTTATTCATTGCTGCGAAGTCTTTCAATGATGTGCCTAGGAC
GGAAATATGACCACCAGACCGAACCATACCCTTCTGCACCAATGACCGAA
TATTCGGCATCGCGGGTGGTCTGTGGAGCCATCCTCTTGCCCACCATATC
CATGTACGTGGGTAGAGTTCTTTACAGCTCTGTCGACGATAGATTGCAAC
AAACTCTTCTTGGGGGATTGACTTTCATAGCGATCAAGGGATTCCTCAAA
ATGTACCTCATGCATAGCCAATACATCTGTCGTATGAAGCGTCGTGTTTT
GGATTACACGAAGGAAAACCTAGCGGAGGCAGACGGACACGCAAGCTTTC
TAGACCAT
FMO07111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17991-RA | 1064 | CG17991-RA | 66..947 | 9..890 | 4365 | 99.7 | Plus |
| CG9855-RC | 1718 | CG9855-RC | 355..549 | 65..259 | 210 | 75.1 | Plus |
| CG9855-RA | 1533 | CG9855-RA | 355..549 | 65..259 | 210 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27241332..27242213 | 9..890 | 4365 | 99.7 | Plus |
| 3R | 32079331 | 3R | 4397260..4397454 | 259..65 | 210 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:08 has no hits.
FMO07111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:53 Download gff for
FMO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17991-RA | 61..947 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:36:38 Download gff for
FMO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17991-RA | 61..947 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:38 Download gff for
FMO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17991-RA | 61..947 | 1..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:38 Download gff for
FMO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27241327..27242213 | 1..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:53 Download gff for
FMO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23067049..23067935 | 1..890 | 99 | | Plus |
