FMO07116.5prime Sequence
1220 bp (1057 high quality bases) assembled on 2008-10-06
> FMO07116.5prime
CAGTCGACATGCGAAATTCAAAGAAAGATTCGTTCAGGGAAGAAATTGGG
AGTGGGACTAGGAGGCCGCACAACTCGCTAAATGACCCCTTGAATCTGGT
TGACCGGGAACTATCTGTTCTCTTGAGGATACCGAAGCTTAAATTCAAAT
CCGTGGAGCCCCTACCCATCGCTTCCAGGGACTATGGGCTAATGAAGTCC
TCTAATAAGTCGTCGACTCCATATCCTCGCGCGCAGCAAGGAGTTGATGC
CAGTTTACTAAAGGCCCGCCTCATAATGCGTACTGGTTCTGATAATCGAA
ACAATTCACGCTCGGAAAGGCCAGAAAGACCGGAAAGGCCGGACGACGGA
AGTCCAAGTATCAGCGATGGGAGCTCTCATAGGTCGAAAACCCTGCCAAA
ATCTAAGCCTTCTGTATCCGTATTTCGTCGCCAGTCGCTGACTAGGAGTA
TCAAGGATATAGTTGCCGTTGGCACTCCGCATCCAAAAAAAGGCGTGGCC
TTGAATCCCAGGGTACTGGGCCGGCGGCTGACCGACATAAACGAAATGTT
ATGGAAAACAACCGATATGAGCGAACATTCAATGCCAAACCTGGTGAAGC
CGAAGAGGTTAAAGGGGAAAAGGAAGGTCCTACTGGCAACGCCCGCGGAA
AGTCGAGAATCGGAGTTTTTACACCGCCCCGGAGCACCGCCAGATGGAGA
CCTGGTCGGTGATGGTGTGAGCCCGCGGTTAACCCAGATCGACAGCACGT
TGTGCTCGATTAGCGAGGAATTCCAGGAGCCGCAGCTGAGTTTCGCAGAG
CGACGCAAGATTTCCCAGGAGGGGGAGTACACCATTGCGAAATACGGCCG
CAAAATGAGCGATGTGATGATGGCGGCCCCAAATGCAAACCAGGAGGTTG
ACGACAAAGTGTGCGTTACGCAAAAAAGCTAGTTTAGAAATGGAGAGGTA
TATGCGATCGCAGGGCCTGGTCAAAATATCTAACGATCAGGTTACATGAC
CAGAAAAATGGGCCCGTATATCGACGCAGATGACGCAGCTTTCTAGAACA
TTCGGTTGGCGCGCGGCCAGGTAAGTGGTCATATCATAATCATATCTATC
TAATACCACTAGCTAGGGAATCTGTATGACTAGTGCTGATTCTCACATAA
ACGCTGGCACGAGGTTGCACATCGATGAATCTGAAGGTCTATACATGGAT
CTATTCACAGCGGAATCAGA
FMO07116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1413 | CG15025-RA | 144..1170 | 9..1033 | 4995 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19489813..19490442 | 1033..406 | 2925 | 99 | Minus |
| 3R | 32079331 | 3R | 19490574..19490972 | 407..9 | 1980 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:23 has no hits.
FMO07116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:21 Download gff for
FMO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 139..1170 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:46:42 Download gff for
FMO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 139..1170 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:54 Download gff for
FMO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 139..1170 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:54 Download gff for
FMO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19489813..19490440 | 408..1033 | 99 | <- | Minus |
| 3R | 19490574..19490976 | 1..407 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:21 Download gff for
FMO07116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15315535..15316162 | 408..1033 | 99 | <- | Minus |
| arm_3R | 15316296..15316698 | 1..407 | 98 | | Minus |
