FMO07118.5prime Sequence
344 bp (344 high quality bases) assembled on 2008-10-06
> FMO07118.5prime
ATGATGCACAGGATCGCCGTGCCATCGATGACCAGCCAGTTGAGCCAAAA
GTTCGGTGTGCGCAGCTACTCGGCCAAGAGCACCATCGAGGACATCAAGT
TCCGCGTGCTAAAGGTTGTCTCCGCCTACGACAAAGTGACCGCCGAAAAG
CTCAACGTTGAGTCGCACTTCATCAACGACTTGGGACTGGATTCCTTGGA
CCACGTGGAGGTCATCATGGCCATGGAGGACGAGTTCGGTTTCGAGATCC
CCGACTCTGATGCCGAGAAGCTGCTTATACCTGCCGACATTATTAAGTAC
GTCGCCGAAAGGAGGATGTGTACGAGGCAAGCTTTCTAGACCAT
FMO07118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtacp1-RB | 625 | CG9160-RB | 212..538 | 1..326 | 1595 | 99.4 | Plus |
| mtacp1-RC | 739 | CG9160-RC | 473..652 | 148..326 | 860 | 98.9 | Plus |
| mtacp1-RA | 740 | CG9160-RA | 386..565 | 148..326 | 860 | 98.9 | Plus |
| mtacp1-RC | 739 | CG9160-RC | 212..347 | 1..136 | 680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1331278..1331456 | 149..326 | 830 | 98.9 | Plus |
| 3L | 28110227 | 3L | 1330863..1330964 | 49..150 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 1330243..1330290 | 1..48 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4530..4568 | 286..248 | 114 | 76.9 | Minus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3551 | 226..315 | 107 | 60.4 | Plus |
FMO07118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:13 Download gff for
FMO07118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtacp1-RB | 212..544 | 1..334 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:51 Download gff for
FMO07118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtacp1-RB | 355..687 | 1..334 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:24 Download gff for
FMO07118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtacp1-RB | 212..544 | 1..334 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:24 Download gff for
FMO07118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1330243..1330290 | 1..48 | 100 | -> | Plus |
| 3L | 1330863..1330964 | 49..150 | 100 | -> | Plus |
| 3L | 1331280..1331462 | 151..334 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:13 Download gff for
FMO07118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1331280..1331462 | 151..334 | 96 | | Plus |
| arm_3L | 1330243..1330290 | 1..48 | 100 | -> | Plus |
| arm_3L | 1330863..1330964 | 49..150 | 100 | -> | Plus |
