Clone FMO07122 Report

Search the DGRC for FMO07122

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:71
Well:22
Vector:pMK33-CFH-BD
Associated Gene/Transcriptprimo-2-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07122.5prime Sequence

518 bp (518 high quality bases) assembled on 2008-10-06

> FMO07122.5prime
CAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAATGGTGTGT
GTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATGCGTGACTT
GGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAGCGCCGGGA
TCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCACTGAATGTC
CTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTTCTAGCTCC
GGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCTGAGCAACC
TGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCAAGTTGCTG
ATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATTGAGGATCC
CTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCGGCAGTGCA
GCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAACAGATAATG
GCAAGCTTTCTAGACCAT

FMO07122.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RA 1336 CG33748-RA 146..637 9..500 2460 100 Plus
primo-2-RC 1336 CG33747-RC 146..637 9..500 2460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13711218..13711572 408..54 1775 100 Minus
3R 32079331 3R 13710935..13711027 500..408 465 100 Minus
3R 32079331 3R 13711644..13711690 55..9 235 100 Minus
Blast to na_te.dros performed 2014-11-28 22:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3833..3922 505..418 112 60 Minus

FMO07122.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:11 Download gff for FMO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 146..637 9..500 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:37:00 Download gff for FMO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..637 9..500 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:02 Download gff for FMO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..637 9..500 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:02 Download gff for FMO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13710935..13711027 408..500 100 <- Minus
3R 13711219..13711571 55..407 100 <- Minus
3R 13711645..13711690 9..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:11 Download gff for FMO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9536657..9536749 408..500 100 <- Minus
arm_3R 9536941..9537293 55..407 100 <- Minus
arm_3R 9537367..9537412 9..54 100   Minus