FMO07123.5prime Sequence
464 bp (464 high quality bases) assembled on 2008-10-06
> FMO07123.5prime
CAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCGTTTTATGC
GGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAAAAGAAACA
GCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCCGGCAGGGG
ATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTGACGGAGGA
GGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCTCCATGTGA
CATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCCCAACCATT
GCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATTTCCGCATC
TACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTATTACGAACG
ACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAATATGGCAA
GCTTTCTAGACCAT
FMO07123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30270-RC | 573 | CG30270-RC | 43..480 | 9..446 | 2190 | 100 | Plus |
| CG30270-RD | 563 | CG30270-RD | 43..470 | 9..446 | 2030 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22784452..22784839 | 59..446 | 1940 | 100 | Plus |
| 2R | 25286936 | 2R | 22784346..22784396 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 744..820 | 352..270 | 105 | 61.4 | Minus |
FMO07123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:15 Download gff for
FMO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30270-RC | 39..483 | 1..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:46:36 Download gff for
FMO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30270-RA | 44..488 | 1..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:48 Download gff for
FMO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30270-RC | 39..483 | 1..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:48 Download gff for
FMO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22784342..22784396 | 1..59 | 93 | -> | Plus |
| 2R | 22784453..22784842 | 60..450 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:15 Download gff for
FMO07123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18671847..18671901 | 1..59 | 93 | -> | Plus |
| arm_2R | 18671958..18672347 | 60..450 | 99 | | Plus |
