Clone FMO07132 Report

Search the DGRC for FMO07132

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:71
Well:32
Vector:pMK33-CFH-BD
Associated Gene/Transcriptmsd1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07132.5prime Sequence

440 bp (440 high quality bases) assembled on 2008-10-06

> FMO07132.5prime
CAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAATGGCGGCC
AATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAGATAATGGA
GCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAAGGCATTCA
GTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACCTCAGGCCG
GAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAGCTGCTCAT
GTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGAGGGCTGCC
TGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGCGTAAGCTG
GTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAGGAAGAGCA
GTATGCCAGCGAGGATTCCCCCGCAAGCTTTCTAGACCAT

FMO07132.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 528 CG13914-RA 34..452 4..422 2080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331873..1332250 45..422 1890 100 Plus
3L 28110227 3L 1331777..1331818 4..45 195 97.6 Plus
Blast to na_te.dros performed on 2014-11-28 19:54:15 has no hits.

FMO07132.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:33 Download gff for FMO07132.5prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 31..457 1..429 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:41:14 Download gff for FMO07132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13914-RA 46..472 1..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:38 Download gff for FMO07132.5prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 31..457 1..429 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:38 Download gff for FMO07132.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1331774..1331818 1..45 93 -> Plus
3L 1331874..1332255 46..429 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:33 Download gff for FMO07132.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1331774..1331818 1..45 93 -> Plus
arm_3L 1331874..1332255 46..429 99   Plus