FMO07139.5prime Sequence
593 bp (593 high quality bases) assembled on 2008-10-06
> FMO07139.5prime
CAGTCGACATGGCTTATTCCTGGGATAACCGTGTCGATTTTGTCGTTCGG
TATATGTATGATATCGACAACAATGGATTTCTGGACCAAAATGATTTTCT
GTGCATGGCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGATTGCAGCA
CTGCTCGATTGGATGATTATAAAAAGCTAATGAAAAATTTATGGGATGAA
ATCTCTGCTATTGCTGACGACGATAAGGATGGCAAAATATCCAATCAAGA
ATTTAAGGATGCTGTAAAAAAAACATGTGTGGGTAAAAAGTACGAAGAAT
TTCCACAGGCAATGAGAGCATTCATTGAATCAAACTTCAAGCTTCTTGAC
ATAGACAGCGATGGAATAGTCGGAGTTAAAGAATACCGTTATAACTGTAT
AACTAGAGTAGCCATCGACGATATTACTCCAATTGATAAAGCCTTTGAAA
CATTGTTGAATGACGAGGACCGGAAACGTGGCGGTCTTTCCCTAGATCGC
TATAAGGAACTGTATGGTCAATTTTTGGGAAACACAGCCGATAATCATCC
AGCAGTAAATCTCTTTGGGCCCTTAGCAAGCTTTCTAGACCAT
FMO07139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scp1-RB | 1198 | CG15848-RB | 115..681 | 9..575 | 2835 | 100 | Plus |
| Scp1-RA | 984 | CG15848-RA | 74..640 | 9..575 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 2963055..2963223 | 228..60 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 2937670..2937825 | 462..307 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 2856001..2856156 | 462..307 | 750 | 98.7 | Minus |
| 2R | 25286936 | 2R | 2853283..2853415 | 463..331 | 620 | 97.7 | Minus |
| 2R | 25286936 | 2R | 2933171..2933284 | 575..462 | 570 | 100 | Minus |
| 2R | 25286936 | 2R | 2954996..2955079 | 309..226 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 2967095..2967146 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:27 has no hits.
FMO07139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:52 Download gff for
FMO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 66..643 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:20:47 Download gff for
FMO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 66..643 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:09 Download gff for
FMO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 66..643 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:09 Download gff for
FMO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 2933167..2933284 | 462..579 | 98 | <- | Minus |
| 2R | 2937671..2937823 | 309..461 | 100 | <- | Minus |
| 2R | 2954997..2955077 | 228..308 | 100 | <- | Minus |
| 2R | 2963056..2963222 | 61..227 | 100 | <- | Minus |
| 2R | 2967095..2967150 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:52 Download gff for
FMO07139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 1708136..1708253 | 462..579 | 98 | <- | Minus |
| 2RHet | 1712640..1712792 | 309..461 | 100 | <- | Minus |
| 2RHet | 1729966..1730046 | 228..308 | 100 | <- | Minus |
| 2RHet | 1738025..1738191 | 61..227 | 100 | <- | Minus |
| 2RHet | 1742064..1742119 | 1..60 | 93 | | Minus |
