FMO07142.5prime Sequence
1224 bp (1019 high quality bases) assembled on 2008-10-06
> FMO07142.5prime
CAGTCGACATGTTCAGGATAATGAAAACCGCATACCTCATCCTGATTCTT
TCGCTCTCGATATCCACTTCCTTGGCTAACGATCCGCAGAGGTCCTTCGA
TCAGAATGCGGACAATCCGTGCAGTGCTCACCGCATTTGGGTTTGGAGAC
CCATCCTCGATCGATTCGCCAAGGTGAACTCCAGCGATGAGCTGAAGAAC
CAGGTCAACGCCATGTCGGAAACCATCAAGGACCTGCAGACGCGCATTGG
CCACAAGAACGAGCTGCTCCTGCTGCAAGCCGGTCAGATCAAGGACCAAA
GTGCCAGGCTCAACGTTTTGATCAAAAACATGAAAGTCCTTCGAAGTGAG
TGTCTGAATGCCCAGGCGGAGATCAAAAGCAAGGACATACAAATACAATT
GAGCGCGGCAAAGATCAAGCAAATGAGCAACGAACTGGTGACGCAGTGCA
GCCGCCAGGACACGTGTCCCATCGACGGCAAAGGTGGCATCTATAAGCTG
AAGATCCGTGAATTGCCAGCATTCGAGGCGCCGTGCAGTTCCAACGGCTG
GTTGACCATACAGAAACGATACGATGGCGCCGAGAACTTCGATCGCGGTT
GGAAGGACTACAAGGATGGTTTCGGACGCGTGAGAGGTGAGTTTTTCATC
GGCCTGGAGAAAGTGCACCTTATGACGCGGCAACGACGCCACGAACTGTA
CATTAAGCTGGGCAAGATTGATGGCACCACTAGCCACGCCCACTACGACA
ACTTCGAACTCGGCGGCGAGATTGAATCCTATGAGCTAAAGTCACTGGGC
CGCTACAATGGCACAGCCGGCGATTCTCTGCGGCCACATGAGCGCCAAAA
GTTCACCACCAACGACAAGGACAACGATGCCTATCGGTTCAACTGTGCCG
CCGACGAATATGGTGGCTGGTGGTACTACGATTGCGCAAGAGCATGCTCA
ATGGCCAGTTCTCCAGGAGGGCCCGCTCGCGGAATGGAAAAACCAATGGC
ATCCTGGTGGGCTCCTGGCACAACAACGATTGACCTACTTCGCTAACCTT
CGTTGGAGATGGATGAATAGGCCGCGATAGATGCAGCTTTCTAAACATTC
GTTGGGCCGCGGCCCAGTAATGGCATATCATATCTAATCTAACCCTAATC
CACTAGCCTAGGGATCCGGCAGTGACATGTGCCTGAATCCACCAGATAAA
AGCGCCCGGGCGACAACGAGAGGC
FMO07142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6788-RA | 1150 | CG6788-RA | 12..1086 | 8..1082 | 5105 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17888188..17889117 | 8..937 | 4650 | 100 | Plus |
| X | 23542271 | X | 17898637..17899272 | 302..937 | 3180 | 100 | Plus |
| X | 23542271 | X | 17889200..17889312 | 941..1053 | 355 | 87.6 | Plus |
| X | 23542271 | X | 17899355..17899467 | 941..1053 | 355 | 87.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:17 has no hits.
FMO07142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:33 Download gff for
FMO07142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6788-RA | 5..1091 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:41:33 Download gff for
FMO07142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6788-RA | 5..1091 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:09 Download gff for
FMO07142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6788-RA | 5..1091 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:09 Download gff for
FMO07142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17888181..17889123 | 1..942 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:33 Download gff for
FMO07142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17782214..17783156 | 1..942 | 99 | -> | Plus |
