FMO07143.5prime Sequence
1258 bp (1034 high quality bases) assembled on 2008-10-06
> FMO07143.5prime
CAGTCGACATGGGTTTCGAACCCTCTGAGGATAAGGCAAGGCCTGGAGGT
CTTGGCGTGCGACACTGGCAGGCGGTTCTTCTGTTCGTGGGCATGATGAT
CAACTACTTCCAGCGGGTGAACATCTCGGCTGCCATTGTGCCCATGACGC
AGTCCACCGCGGGGGCTCCGTTCTACACCTGGGATACGTCGGACAAGTCC
CTGATCCTCAGCAGCTTTTTCTGGGGCTATGTGGTCTCCCAGGTGCCGGC
AGGACTGCTTGCCAAGCGATTTGGAGCCAAGTTAGTGCTGGGCCTGGCGA
CTGCAATCGGAGGTATTTTGTGCTTCTTCCATCCCATTGCAGCCAAAAGC
GGGTGGCAGAGTATCTGCGTTCTGCGCGTTCTTACCGGTCTGGTCCAGGG
CACGGTTTATCCGTGTGTCCACACGCTGCTGGCTAAGTGGGTGCCACGCA
CTGAGCGGGGACTGCTAACCACTGGCGTTTATTCGGGAGCACAGTTCGGA
ACGGCTGTCATCCTGGTCACCAGTGGCTTCATCTTCGAATCCAGCATGGG
TTGGCCAGGGTTGTTCTACCTTTCCGGAGGTCTCAGCCTCGCTTGGGCGC
TGCTTTTCTTTTGGCAGGCCGCCAATGAACCGGTTACAGCCAGCAGGATC
AGCAAAGGCGAGGTGGAGTATATCGAAAGCCTTACGGGCAGCAACAGCTC
CAGTCAGTCTATGCCTGTGCCCTGGATGTCGATCTTTAGGTCGCCAGCCT
TTTACGGTCTGCTGGCAGCCCATTGTGGATTCACCTGGGGTTTCTACACG
CTGCTCACCGAAATGCCCACTTACATGAGCATGGTTCTGCAGCTAAATGT
CAAGTCCAATGCCTTCCTCTCCTCGCTGCCGTACTTTGCTATGGGCCTGC
TCTGCTTTGTGTCAGTCCCATATCGGATTTGCTTATCAACAGAGCCACTA
TATCGATCACCACGGCTCGAAAGGCTGTTTATTCGATTGGACAGTGGGGA
CCGATGGCTTTGTTTGATTGACTGGGCTACATGACCGCCGATGAGAAAAC
GTGGTCATTCTTCTGCTGACACTGCAGTACATCAATGCGGGCTGTTCTGT
GAATATCTGAATCAATCCCACTCGAACTGGTCGCCCAACTTTGGCGCCCA
AGTATGGGAATTCACCCATGATTGCGGATGAACTTCTATTGCTCCCTGGG
TGGTGGACGCCATCGTGAGCTGCTGAGAGTGAGAGCATTACCATCAACGA
GAGTGGGC
FMO07143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8791-RA | 1840 | CG8791-RA | 95..1268 | 9..1177 | 5315 | 97.5 | Plus |
| CG8791-RB | 2292 | CG8791-RB | 581..1720 | 43..1177 | 5145 | 97.5 | Plus |
| CG8791-RC | 1811 | CG8791-RC | 100..1239 | 43..1177 | 5145 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7928357..7928813 | 251..707 | 2285 | 100 | Plus |
| 2R | 25286936 | 2R | 7928874..7929284 | 706..1110 | 1550 | 94.6 | Plus |
| 2R | 25286936 | 2R | 7928086..7928296 | 43..253 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:06 has no hits.
FMO07143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:11 Download gff for
FMO07143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8791-RA | 87..1249 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:41:34 Download gff for
FMO07143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8791-RA | 63..1225 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:17 Download gff for
FMO07143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8791-RA | 87..1249 | 1..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:17 Download gff for
FMO07143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7928086..7928295 | 43..252 | 100 | -> | Plus |
| 2R | 7928359..7928813 | 253..707 | 100 | -> | Plus |
| 2R | 7928876..7929331 | 708..1159 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:11 Download gff for
FMO07143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3815591..3815800 | 43..252 | 100 | -> | Plus |
| arm_2R | 3815864..3816318 | 253..707 | 100 | -> | Plus |
| arm_2R | 3816381..3816836 | 708..1159 | 94 | | Plus |
