FMO07146.5prime Sequence
1202 bp (1053 high quality bases) assembled on 2008-10-06
> FMO07146.5prime
CAGTCGACATGAGCAGCATGAAGGGCAGCTTCGCCACACTGAACCGCTGG
TTTGGCCGAAAAAAGGACAAATCCGGCACTGGCAACTCCTCCATGGGCAA
GTTGTCCAAGTCGTCGACACAGCTCCACCATTTGTCCACGGACACGGACA
TCAACGAGACTAGTCAATTGGAGTACAACCGGATAACCCCGGTGCCCGCG
GCAACCAGCAATGCGCCCTTTGAACAGACCTTCCGCATCACCGTTCTGCT
GCCGAAGGATCAGCTCTTCGTGGCCCGATTGGGAGCCAGAGTTCCACTGA
GTAAGCTCTTGTCCCTCGTCTGCGACAACAAGCAACTGGATGCGGACAAG
TACGAGTTTCGCAGTCCAGTGGATGCTAGTCAGGTGTACAGCTGCGAATC
AACGATCGGAACAGTGGGTCTCTCAGAGATCCGACTGTGCCACAAGTCGG
AGTCCTATGACAACTTCAATCCGGACGTAATGCACAAATTCCAGCGCACC
GGTGTCGCTCGAGACTCGTTGAGCAGCAGCTCGGACTTCAGTAGCAGCCG
GCACTCAAAGGTCACGGCCAAAACGCCGAGTCCGTACAGTTCCAGCAACT
CACTGAACTCCATGGACTCCACGGGAATGAACTACACTCGTACCCCGGTG
GTGGTGCCACCAGCAAAGGTACTAGCACCGCCACCCCGCAAAAAGCGAAC
CGCTCCTCGGCCGCCAAGCCAGGTTTGCATTCCAGAGCAGTCTGTTCCGG
ATATTCCAGCTGCTAACTCGAAAAGCGAACCCGCTTATGCGGTAATTGTC
AAGCGCCCCCAGCTCTGCATGTCCACGCCCAACCTCTCCGGTCCCTTGGA
GTTGGACTGCAATGGTAACGGCTCAAGTCGCCGGATGAGACTCAACGGAT
GGCCATTATGCTACACTGGATCTGAAACCTCCGATTGCTGCGGTCCGGAG
CCACGCCTCGAAAGCGATGCTGCAGATCAAAAGAAACGGCACCGGCTCCA
CCGCCGACTTCAAGTGGGGGAGACAATATATCACTGGCCTCACTACGGAC
CGTCACACTACCCGAAATCCGCACAGGCCTAGAATAACACTCCTGCAATG
CCGACGCATCTCCCATGCAGTATGGCATGGCACGGATCCGAATGAACGTC
AGTCTCGATACGCATCGAATCGATCTGGGCGGCCTAGAGTAGAACCGGAT
TC
FMO07146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ptr-RE | 4207 | CG2841-RE | 231..1340 | 5..1093 | 5020 | 98 | Plus |
| ptr-RD | 4955 | CG2841-RD | 662..1771 | 5..1093 | 5020 | 98 | Plus |
| ptr-RA | 4599 | CG2841-RA | 306..1415 | 5..1093 | 5020 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2348191..2348880 | 1046..367 | 2990 | 98.3 | Minus |
| X | 23542271 | X | 2348945..2349248 | 369..66 | 1520 | 100 | Minus |
| X | 23542271 | X | 2349342..2349403 | 66..5 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:53 has no hits.
FMO07146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:32 Download gff for
FMO07146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ptr-RA | 304..1382 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:41:15 Download gff for
FMO07146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ptr-RA | 304..1382 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:23 Download gff for
FMO07146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ptr-RA | 304..1382 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:23 Download gff for
FMO07146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2349342..2349405 | 1..66 | 96 | | Minus |
| X | 2348191..2348877 | 370..1046 | 98 | <- | Minus |
| X | 2348945..2349247 | 67..369 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:32 Download gff for
FMO07146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2242224..2242910 | 370..1046 | 98 | <- | Minus |
| arm_X | 2242978..2243280 | 67..369 | 100 | <- | Minus |
| arm_X | 2243375..2243438 | 1..66 | 96 | | Minus |
