FMO07148.5prime Sequence
1221 bp (1004 high quality bases) assembled on 2008-10-06
> FMO07148.5prime
CAGTCGACATGAAGAGCGTGCTGATGGTGGCCGAGAAGCCCTCGCTGGCG
GCCTCGCTGGCGGGGATTCTCTCAAACGGACGCTGCACGGCCAAGCGTGG
CACCGGCAACGGCTGCTCCACGCACGAGTGGACGGGCAACTTTCGGAACG
AGGGCAGCGTCCACTTCCGGATGACTTCCGTGTGCGGTCATGTCATGTCG
CTGGACTTCAATAAGAAGTACAACTGCTGGGACAAGGTGGATCCCATCCA
GCTCTTCGGTTGTGCCACCGAAAAGAAGGAAACGAATCCCAAGCAGAACA
TGCGCAAATTTCTGGCCCACGAGGCGCGCGGCTGTGACTATCTGGTGCTC
TGGCTGGATTGCGACAAGGAGGGCGAGAACATCTGCTTCGAGGTGATGGA
CGCCGTGAAGCATGTCATCAACAATGTGTACAGCGATCAGGTGACATACC
GTGCCCACTTCTCGGCTATCACGGAGAAGGACATCAAGAAAGCCATGGAG
ACGTTGGGGCATCCCAACGAGAACGAGGCCAAGTCGGTGGACGCCCGGCA
GGAATTGGACCTGCGCATTGGCTGCGCCTTTACCCGCTTTCAAACGAAGT
TCTTTCAGGATCGCTACGGTGACCTGGATTCGTCGCTGATCTCCTACGGT
CCCTGCCAGACGCCCACGCTCGGTTTCTGCGTGAAGCGGCACGACGACAT
CCAGACCTTTAAGCCGGAGAGCTTCTGGCATCTGCAGCTCCTCGCCGGCC
AGCCGGAAGTCACGCTTGAATGGGCGCGCGGTCGGGTCTTCAAGAAGGAC
ATCGCCATCATGCTGCTGAATCGCGTCAAGGAGCACAAGAAGGCCACTGT
GGAGAGCGTGGCCAGCAAGGAGCCTACAAGAGCAAACCACAGGCACTGAA
CACCGTCGAACTGATGCGTATCTGCAGCTCCGGACTGGGCATCGGACCCT
TTCCAGGCGATGCAGAATAGCTGAGCCCCTGTACACGCAAGGGCTACATC
AGCTTATCGCGAACGAAGACCAATCAGTATCCGACTAACTTCGATCTGGC
GGGCGTGCTGCAGTGCTGAAAGCCATCGGGCGGACTCGGTGAGGGAGGCC
CCTGCTATTTCTTGGATGCGACATCTCAGATACGGCCTAGCGAAAGGCAA
GGATGCGGCGACCAATCCACCTTACGCCAATGACTGGCAACGCAGTACCT
CATTCGACACCTGTGCAGTGC
FMO07148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 3296 | CG3458-RB | 259..1424 | 8..1183 | 5155 | 97 | Plus |
| Top3beta-RA | 2963 | CG3458-RA | 259..1424 | 8..1183 | 5155 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6286822..6287570 | 847..99 | 3745 | 100 | Minus |
| X | 23542271 | X | 6286270..6286482 | 1062..848 | 760 | 94.4 | Minus |
| X | 23542271 | X | 6287640..6287732 | 100..8 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:50 has no hits.
FMO07148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:26 Download gff for
FMO07148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 259..1358 | 8..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:41:27 Download gff for
FMO07148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 233..1332 | 8..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:06 Download gff for
FMO07148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 259..1358 | 8..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:06 Download gff for
FMO07148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6286223..6286482 | 848..1110 | 92 | <- | Minus |
| X | 6286822..6287569 | 100..847 | 100 | <- | Minus |
| X | 6287641..6287732 | 8..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:26 Download gff for
FMO07148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6180256..6180515 | 848..1110 | 92 | <- | Minus |
| arm_X | 6180855..6181602 | 100..847 | 100 | <- | Minus |
| arm_X | 6181674..6181765 | 8..99 | 100 | | Minus |
