FMO07154.5prime Sequence
1210 bp (1018 high quality bases) assembled on 2008-10-06
> FMO07154.5prime
CAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGGTCGTGGCC
CTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAATGGCAAGTA
TACGGTTCCACAGCAATCCTCTAACGATGGCAAGTATCGCCCCAGCGACG
ATGGGAAGTACCATGGGAATTCGCAGAACGAAGGCCGGAGTGGTTCGCAA
GAAAGTATAGGTCGCTATCATCACATGCCGATTCCCTACAGACATGTGAG
CGATCAGCGTGAGCTTGGAAAATACCATCACATTCCCTATCCCTATGACG
GAGGCTATGGACCCTACGCTGGTTCGAATATTCCCTATGTCCATGACGAC
AGGCCTTACAACCACGACCTGTACACAAGCACGACCACCAAGAAACCAAC
CACGACCACCAAAAGGACGACAACCTCGACCACCACCACCACCACCACGC
CCCGCAATATTCTGTTCAACTACGATGATGAGGGTCGCCACAAGATCCTG
CACAAGGAAGAGGTCCGCAAACAGGACAAATACGATCACTCTTACCTGAC
TGAGAATGGAATCTATGGCGAGGAGCAGGCCAAGCTTCACCACACCGGAG
GCACACATGCCAAGGGATTCTATGAGTACACCGGTGACGATGGCAAGCTT
TATCGCGTAAACTACGCCTCCAACGATGGCGGCTTCATGCCCCAGGGAGA
CCACATTCACCCGATCCCCGATGCCATTGTCCGTGCCCTCAAGTACGTGG
AGGAGCAGCACAAGATCAACGGTGGGGCTCAGTTCGACCATCGCGGCTTC
CGCATCAATCACATGACCAAGGACCTTATGCGCAGATCAAGGCGATCCAT
CTGGAGGAGATGCCCAAGGAGCTGACCGAGCAGATCCATATGCTGAGCAC
GAGGTGGAGCTCGCCGAGGAGAGAGCGCGAGAGCAGCGCATTGGAGCGAC
TCCGCCAGGCAGCAAGTCCCACGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCAGGTAAGTGTTCATATCATATCTAATTCATATCATATCACAA
CTAGGCTAGAGATCTGGTCATGAATTAGGCTTGGAATCTCACAATAAACG
CCGGCGCACGAACGGTCTGAACAATCGAAATGGTTTGAGTCTATCTACTT
TCACAGGATTCCAGCGACTCGATATCAAATTAGCCGCCGGCCTGTCACCA
TTCATGTCCG
FMO07154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ac-RC | 1434 | CG8502-RC | 96..1069 | 7..972 | 4665 | 99.1 | Plus |
| Cpr49Ac-RG | 1701 | CG8502-RG | 390..1336 | 7..972 | 4195 | 96.2 | Plus |
| Cpr49Ac-RF | 1407 | CG8502-RF | 96..1042 | 7..972 | 4195 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12389254..12389684 | 542..965 | 1845 | 97.9 | Plus |
| 2R | 25286936 | 2R | 12388923..12389086 | 378..541 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 12388298..12388450 | 209..361 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 12387381..12387518 | 47..184 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 12387055..12387096 | 7..48 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:55 has no hits.
FMO07154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:31 Download gff for
FMO07154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RC | 90..1077 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:41:55 Download gff for
FMO07154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RC | 71..1058 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:42 Download gff for
FMO07154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RC | 90..1077 | 1..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:42 Download gff for
FMO07154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12387049..12387095 | 1..47 | 93 | -> | Plus |
| 2R | 12387382..12387517 | 48..183 | 100 | -> | Plus |
| 2R | 12387913..12387939 | 184..210 | 100 | -> | Plus |
| 2R | 12388300..12388450 | 211..361 | 100 | -> | Plus |
| 2R | 12388518..12388533 | 362..377 | 100 | -> | Plus |
| 2R | 12388923..12389086 | 378..541 | 100 | -> | Plus |
| 2R | 12389254..12389700 | 542..982 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:31 Download gff for
FMO07154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8276428..8276591 | 378..541 | 100 | -> | Plus |
| arm_2R | 8274887..8275022 | 48..183 | 100 | -> | Plus |
| arm_2R | 8275418..8275444 | 184..210 | 100 | -> | Plus |
| arm_2R | 8274554..8274600 | 1..47 | 93 | -> | Plus |
| arm_2R | 8275805..8275955 | 211..361 | 100 | -> | Plus |
| arm_2R | 8276023..8276038 | 362..377 | 100 | -> | Plus |
| arm_2R | 8276759..8277205 | 542..982 | 97 | == | Plus |
