FMO07161.5prime Sequence
263 bp (263 high quality bases) assembled on 2008-10-06
> FMO07161.5prime
CAGTCGACATGTTCAAAGTGCGCAGCTTGGCGCTCATGAAATTGAGTGAA
GGCGTTTTCGGCGCACGACTAATGGCCAAATCGCCGAAGGATTCGGGCAA
GGATTCTTGCAAGGGTGCCGATTCCAAAAAGAAGAAAGACAAAAAGAAGA
AGGATATGTGTGGCAGAACTGTTGTTCCCACTTCACCACGTTGCAAAAAC
AAACCCGGCGGCTCAGACAAATCCAAAGATGAGTGCAAGAAAAAGGCAAG
CTTTCTAGACCAT
FMO07161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43439-RA | 990 | CG43439-RA | 84..321 | 8..245 | 1190 | 100 | Plus |
| CG32388-RA | 990 | CG32388-RA | 84..321 | 8..245 | 1190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6984343..6984503 | 168..8 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 6984203..6984279 | 245..169 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1724..1786 | 142..204 | 99 | 61.9 | Plus |
FMO07161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:43 Download gff for
FMO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 75..325 | 1..251 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:12 Download gff for
FMO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 61..311 | 1..251 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:47 Download gff for
FMO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32388-RA | 75..325 | 1..251 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:47 Download gff for
FMO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6984199..6984279 | 169..251 | 96 | <- | Minus |
| 3L | 6984343..6984512 | 1..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:43 Download gff for
FMO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6977299..6977379 | 169..251 | 96 | <- | Minus |
| arm_3L | 6977443..6977612 | 1..168 | 98 | | Minus |
