FMO07167.5prime Sequence
1222 bp (1032 high quality bases) assembled on 2008-10-06
> FMO07167.5prime
CAGTCGACATGTTGCGAATTCTACTTCTGCTACTGGCATTCTGTGCCTTG
GCACATGGACAGTGCCGATTCACCAGAGCTCAAGTGCAAGGGACCAATCG
GATCTTTATGGTGCGTGGTCAGAACCGCCAGCTGTCCCTTAAGCGAACAG
CCAGTTCGGCGGTTGGCGAAACCCTGCAGATGTGGTGCAATCCCCGGGAC
ATAGTGGCCACCACCTGCCAGGCGGGAAGGGTTCCAGCCTTCCAGCCACC
CTTGCCCATGACCTGCCGCGCTGCTCCGGCGGCCATCACCACACCGGTCC
AAGATCGCAGATGTCCGGCCACCATGTACCGGGTGGGCTACAACGTGGGC
AACAACCAGTTCCTGGAGCTCTATCGCGCCTGCTTCGATACCAGAGCTGT
GAGGGCTATCTTCGTGGAACACCGGGTGTATGGAAAGCCCTTCTATATCA
CCCGACCCTGTGTCCAATTTAGTTCGGATGGAGTGATCAGTGGCGCGGAT
GAAGCTAGCTATACGGTCCGAAATATCCACGGCACCTTTAGGAGGCTGTT
TGGCAACAATCAGAACTATATACCGAACAACCGCGATGTGATCATCAATC
GCGGACATCTGGCCGCCTCGGCCGACTTCTTCTTTGGTGACCAATTGTGC
GCCACCTTCAAGTATGTGAATGCAGTGCCGCAGTTCAAGAGCATCAACGA
TGGCAACTGGGAGACCATCGAGCGATTCGTTCGTAATTCGGTGACCGGAA
ACAACTTTGTGAATGTGCGCACCGGGGCCAGGGGCGTACTCTCGCTGCCA
TCGGGCAATAGACCCAAGAATGTCTTCCTAAGTGGCAACAGGAACCCGGT
GCCCCAGTGGATGTACAAGATAGTGCGGAACGCCACAACCAGCCCATCGT
GGCTTCCTCACCTGAACAACATCTACGCACGTCAACGTCAGCTGCTCCAA
CTTTTGTCAGCCCGTGAATTGCCCGTGGCATTGGTCAACACGGCACAGGC
TGGCTTTTCGTTCTGGTGCCACCCGGCCACTTTCAGGCCGCAAGCTTTCT
AGACATTCGTTGGCGGCGGGTCAGGTAGGTGTCTAAATCTAAATCATATC
TATCATATCACACTAGCTGGAGATCTTGTCTTGACTATGGCTGATTTCTC
ACAATAAGGCGTGGTACGAGCGTCTGACATTCAATGGATTGAGTCATACT
GGATTCTTACCACAGGATCGCA
FMO07167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14062-RB | 1180 | CG14062-RB | 4..1040 | 9..1039 | 4990 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28641725..28642325 | 1039..445 | 2660 | 98.5 | Minus |
| 3R | 32079331 | 3R | 28642396..28642789 | 444..51 | 1970 | 100 | Minus |
| 3R | 32079331 | 3R | 28642846..28642888 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:55 has no hits.
FMO07167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:17 Download gff for
FMO07167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1046 | 6..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:28 Download gff for
FMO07167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1046 | 6..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:10 Download gff for
FMO07167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14062-RB | 1..1046 | 6..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:10 Download gff for
FMO07167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28641719..28642325 | 445..1047 | 97 | <- | Minus |
| 3R | 28642396..28642788 | 52..444 | 100 | <- | Minus |
| 3R | 28642846..28642893 | 1..51 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:17 Download gff for
FMO07167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24467441..24468047 | 445..1047 | 97 | <- | Minus |
| arm_3R | 24468118..24468510 | 52..444 | 100 | <- | Minus |
| arm_3R | 24468568..24468615 | 1..51 | 92 | | Minus |
