FMO07170.5prime Sequence
1198 bp (963 high quality bases) assembled on 2008-10-06
> FMO07170.5prime
CAGTCGACATGTTTTCCCGCAGTCGCTGTGGTTCACTTGTAACAAGTGTG
GCTCGCAAAATGTGGAACCACCCAAGCCAGCGCTGGCTCATCTTGATCTG
CGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCATGGCTATG
CTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGCCAGGCCAG
CTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACGCCCGTGGA
TCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCCCACCGGCT
GGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACCTGGGAAAA
TGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATACTCCAACGA
GAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGATGAGTGCCC
AGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACATCTGGAAC
ACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCCGAGAGGGA
GGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGACTATGAGC
TGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCGAAAAACAC
CGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCCGTGAAGAC
CTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGAGAATCTGT
ACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGAGAGAGGAG
CTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTTTTTTACGCGAAA
GCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATTCCAGCGGT
TTAAAGAGAAAATCCTCCGGGAGCCTAAACCAGATCGTTCGATGTGGGTC
TACAGTGCCTCATGACCCCACGGTAGCCAGCGTTTTGAATGGCCCTGAAA
TTATTTGGCTGCACAGTTCCTCCCTACACGCGTGCATATGATGGAGTTGC
GTGTGATGAAACCAAACCCCCCGTGTTCTCTTATTTTCTACAAAGAAACC
ACAAGCTGATCCTGCCTTGACATACTTGATTGACCTACGTTTCCTGACAA
CTTATGAACCCTCCAAGGACGTTGGACCGGTATAATGGGAGCGCCCAG
FMO07170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acph-1-RB | 1889 | CG7899-RB | 82..1181 | 9..1109 | 5060 | 98 | Plus |
| Acph-1-RA | 1944 | CG7899-RA | 149..1236 | 21..1109 | 5000 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29992085..29992772 | 1007..318 | 3195 | 98.8 | Minus |
| 3R | 32079331 | 3R | 29992986..29993195 | 218..9 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 29992829..29992927 | 317..219 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:30 has no hits.
FMO07170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:54 Download gff for
FMO07170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 77..1184 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:20:45 Download gff for
FMO07170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 77..1184 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:12 Download gff for
FMO07170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acph-1-RB | 77..1184 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:12 Download gff for
FMO07170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29991960..29992012 | 1009..1059 | 92 | <- | Minus |
| 3R | 29992083..29992772 | 318..1008 | 98 | <- | Minus |
| 3R | 29992829..29992927 | 219..317 | 100 | <- | Minus |
| 3R | 29992986..29993200 | 1..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:54 Download gff for
FMO07170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25818551..25818649 | 219..317 | 100 | <- | Minus |
| arm_3R | 25817682..25817734 | 1009..1059 | 92 | <- | Minus |
| arm_3R | 25817805..25818494 | 318..1008 | 98 | <- | Minus |
| arm_3R | 25818708..25818922 | 1..218 | 98 | | Minus |
