FMO07171.5prime Sequence
1172 bp (997 high quality bases) assembled on 2008-10-06
> FMO07171.5prime
CAGTCGACATGGATTATCGTCTAGTGCTGAAAATTCTCAGCTTTCTGCTG
CTGGCCCAATTGGGTTTCTCCCAGCCGCAGCAGCAGTCGCCATCTGACTA
CGGTGAGGAGCAGCCTCCGGAGGGTTATTACGCCTTCGTCGAGTCCCCGA
ATGCGGTGCCTCCCAAGGTCAGGCCGCCACCTTACACCTTTGTAAATGCG
GAGTGCAAGGACGTGGCCGCCGGCAAGAAGTCTGCCGTGTCCGTTCACAA
CATTTGCGGAGATCTAAACAAGGGTCAGATACCCAAGAATCCGCTGGGAC
AAAATGTACTCGGGGAGCCCTATCCCTTCGAACTTATTCGCAACCAAACG
CTGAAGTTCCTTTCGAAAACTTTGCCCGTTCTAAAGGCCGACGATACCCT
ACCCAAGGTCACCCAGATCATTCGAGATGAACCCGTGGAACAGCTGGACA
GCAACAACATCGACAGGCCCTATCCCGCAGGAGGTTCCACTCGCGTCCGC
CGCAGCCTGCCGGAGGGCGTGGAGTCCAACGAGTACAGCTACTTCGATCC
CGCCCTGGACGAGGAGGAGCAACACAAGCAAAGGGATCGGAATAACCAGC
AGAGAAGGGCCGCCGAGGAGAGGAAGCCAAGGAAATTCTGCGATGGCGGT
GGAGTATTTTGCACCTTATACAGGGCAATTCAGGGAGACACCGGAGGAGC
AGCCCCTGCCACGCCCACTGCGGAAAGGCGCGAGGAGGTGGGTCCCATCC
GGTACGAGGGTCCTCCCACTCCCTGTCCCGCCAAGGTAGAGTACGCTACT
CCCGTCTTCGCTAAGAAACTACCAGGCGCCTGGCGTTATGTGGTCCAGAT
TCCCTATGAGGCTACTTCACCCAGACGGTGGAGGTGACGCGTTGCATTCA
GGCACGCTGTCACTACCTGGACGCGGTGCTTGTCGTCACAACGCTGGGTA
AGCCTGTTGGTGGCGGAGATCTTCTACCCAATGCGAGACCAGTGTCCACA
GCTCGACAACACTCAGCCTTCTGTGCAGGATTTCAGCCTACAGCAGTACT
GCAAAAGAGCAGCGTGCTACGGCCTCGACGGAACCTCGTCTTGGACGACG
GACCCGGGCCAGTGAACCCACTGCATGACACGAGAACTGGCGCCTCAAGT
GACTCTCATCAACGACGTAGAA
FMO07171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz6-RA | 1647 | CG9196-RA | 118..1221 | 9..1091 | 4905 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24758857..24759183 | 329..655 | 1635 | 100 | Plus |
| 2R | 25286936 | 2R | 24758497..24758796 | 29..328 | 1500 | 100 | Plus |
| 2R | 25286936 | 2R | 24759584..24759910 | 656..979 | 1400 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:54 has no hits.
FMO07171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:52 Download gff for
FMO07171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz6-RA | 109..1237 | 1..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:20:44 Download gff for
FMO07171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9196-RA | 107..1235 | 1..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:50 Download gff for
FMO07171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz6-RA | 109..1237 | 1..1106 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:50 Download gff for
FMO07171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24758498..24758796 | 30..328 | 100 | -> | Plus |
| 2R | 24758857..24759183 | 329..655 | 100 | -> | Plus |
| 2R | 24759584..24760064 | 656..1112 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:52 Download gff for
FMO07171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20646021..20646319 | 30..328 | 100 | -> | Plus |
| arm_2R | 20646380..20646706 | 329..655 | 100 | -> | Plus |
| arm_2R | 20647107..20647587 | 656..1112 | 92 | -> | Plus |
