FMO07172.5prime Sequence
1039 bp (1039 high quality bases) assembled on 2008-10-06
> FMO07172.5prime
CAGTCGACATGCAGCCAGTTCTGGAAGTGAGCATTTACACCCTGCTGAAG
ATGGCGTTCATTTGGCAGCTGATCTCGGCGGCCATCTACCTCGTAGGACT
GCTCACCATCGGTGTGTTTCTGTACGACAACCTGAAGTCATTGGTCAGCA
TAATCAAGGCCGTCCTGGAACCCTACTTCCAGCCCCACTTGCCAAGGACA
TTGGTGGATAAGTTCGGACAGTGGGCAGTGGTGACTGGAGCCACCGATGG
CATTGGCAAGGAGTACGCCAGGGAGCTGGCTCGCCAGGGTATCAACCTGG
TGCTCATCTCGCGGACGAAGGAGAAGCTCATTGCGGTTACCAATGAGATT
GAGAGCCAGTACAAAGTGAAGACCAAGTGGATTGCAGCGGATTTCGCCAA
GGGACGTGAGGTGTACGATCAGATCGAAAAGGAACTGGCGGGCATAGACG
TTGGCATTTTGGTCAACAACGTGGGCATGATGTATGAGCACCCCGAGAGT
CTGGACCTGGTCTCAGAGGATCTTCTTTGGAACCTTCTTACCGTCAACAT
GGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCCAGATGATTGGTC
GCCGAAAGGGCGCCATTGTCAATCTGGGATCCTCCTCTGAGCTCCAGCCA
CTGCCCAACATGACCGTCTATGCTGCGAGCAAGAAGTTTGTCACCTACTT
CTCCAAGGCCCTGGAACTGGAGGTGGCGGAGCACAATATCCACGTGCAGC
TGGTGATGCCCAACTTTGTGGTGACCAAAATGAATGCCTACACCGATCGG
GTAATGCAGGGAGGTCTGTTTTTCCCGAACGCATACATTTTTGCCCGGTC
CGCCGTATTTACACTGGGAAAACGAGCGAGACCAACGGTTTCTGGACCCA
TGGCATTCAGTATGCCATTATGAAATTGGCTCCCCTGCCGATCCGCACAT
ACTTGGGACACCAACTGTTCAAACGACTGAGATTCGAGGCCTCGAGCAAA
AGCAAAGAAACTGAGCTTACTGCAAGCTTTCTAGAACAT
FMO07172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-RD | 2178 | CG13284-RD | 227..1244 | 8..1021 | 4960 | 99.4 | Plus |
CG13284-RB | 1316 | CG13284-RB | 227..1244 | 8..1021 | 4960 | 99.4 | Plus |
CG13284-RC | 1676 | CG13284-RC | 593..1604 | 14..1021 | 4930 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16843513..16843962 | 910..462 | 2185 | 99.6 | Minus |
2L | 23513712 | 2L | 16846751..16846971 | 228..8 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 16849410..16849778 | 895..528 | 760 | 81 | Minus |
2L | 23513712 | 2L | 16853968..16854336 | 895..528 | 760 | 81 | Minus |
2L | 23513712 | 2L | 16844679..16844803 | 351..227 | 625 | 100 | Minus |
2L | 23513712 | 2L | 16844509..16844620 | 462..351 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16843298..16843397 | 1006..908 | 435 | 98 | Minus |
2L | 23513712 | 2L | 16850158..16850282 | 351..227 | 295 | 82.4 | Minus |
2L | 23513712 | 2L | 16854716..16854840 | 351..227 | 295 | 82.4 | Minus |
2L | 23513712 | 2L | 16849984..16850093 | 462..353 | 250 | 81.8 | Minus |
2L | 23513712 | 2L | 16854542..16854651 | 462..353 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:36 has no hits.
FMO07172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:03 Download gff for
FMO07172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 227..1244 | 8..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:11 Download gff for
FMO07172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 225..1242 | 8..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:28 Download gff for
FMO07172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 227..1244 | 8..1021 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:28 Download gff for
FMO07172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16843281..16843394 | 911..1021 | 96 | <- | Minus |
2L | 16843513..16843961 | 463..910 | 99 | <- | Minus |
2L | 16844509..16844619 | 352..462 | 100 | <- | Minus |
2L | 16844679..16844801 | 229..351 | 100 | <- | Minus |
2L | 16846751..16846971 | 8..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:03 Download gff for
FMO07172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16844509..16844619 | 352..462 | 100 | <- | Minus |
arm_2L | 16844679..16844801 | 229..351 | 100 | <- | Minus |
arm_2L | 16846751..16846971 | 8..228 | 100 | | Minus |
arm_2L | 16843281..16843394 | 911..1021 | 96 | <- | Minus |
arm_2L | 16843513..16843961 | 463..910 | 99 | <- | Minus |