Clone FMO07172 Report

Search the DGRC for FMO07172

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:71
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13284-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07172.5prime Sequence

1039 bp (1039 high quality bases) assembled on 2008-10-06

> FMO07172.5prime
CAGTCGACATGCAGCCAGTTCTGGAAGTGAGCATTTACACCCTGCTGAAG
ATGGCGTTCATTTGGCAGCTGATCTCGGCGGCCATCTACCTCGTAGGACT
GCTCACCATCGGTGTGTTTCTGTACGACAACCTGAAGTCATTGGTCAGCA
TAATCAAGGCCGTCCTGGAACCCTACTTCCAGCCCCACTTGCCAAGGACA
TTGGTGGATAAGTTCGGACAGTGGGCAGTGGTGACTGGAGCCACCGATGG
CATTGGCAAGGAGTACGCCAGGGAGCTGGCTCGCCAGGGTATCAACCTGG
TGCTCATCTCGCGGACGAAGGAGAAGCTCATTGCGGTTACCAATGAGATT
GAGAGCCAGTACAAAGTGAAGACCAAGTGGATTGCAGCGGATTTCGCCAA
GGGACGTGAGGTGTACGATCAGATCGAAAAGGAACTGGCGGGCATAGACG
TTGGCATTTTGGTCAACAACGTGGGCATGATGTATGAGCACCCCGAGAGT
CTGGACCTGGTCTCAGAGGATCTTCTTTGGAACCTTCTTACCGTCAACAT
GGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCCAGATGATTGGTC
GCCGAAAGGGCGCCATTGTCAATCTGGGATCCTCCTCTGAGCTCCAGCCA
CTGCCCAACATGACCGTCTATGCTGCGAGCAAGAAGTTTGTCACCTACTT
CTCCAAGGCCCTGGAACTGGAGGTGGCGGAGCACAATATCCACGTGCAGC
TGGTGATGCCCAACTTTGTGGTGACCAAAATGAATGCCTACACCGATCGG
GTAATGCAGGGAGGTCTGTTTTTCCCGAACGCATACATTTTTGCCCGGTC
CGCCGTATTTACACTGGGAAAACGAGCGAGACCAACGGTTTCTGGACCCA
TGGCATTCAGTATGCCATTATGAAATTGGCTCCCCTGCCGATCCGCACAT
ACTTGGGACACCAACTGTTCAAACGACTGAGATTCGAGGCCTCGAGCAAA
AGCAAAGAAACTGAGCTTACTGCAAGCTTTCTAGAACAT

FMO07172.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13284-RD 2178 CG13284-RD 227..1244 8..1021 4960 99.4 Plus
CG13284-RB 1316 CG13284-RB 227..1244 8..1021 4960 99.4 Plus
CG13284-RC 1676 CG13284-RC 593..1604 14..1021 4930 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16843513..16843962 910..462 2185 99.6 Minus
2L 23513712 2L 16846751..16846971 228..8 1105 100 Minus
2L 23513712 2L 16849410..16849778 895..528 760 81 Minus
2L 23513712 2L 16853968..16854336 895..528 760 81 Minus
2L 23513712 2L 16844679..16844803 351..227 625 100 Minus
2L 23513712 2L 16844509..16844620 462..351 560 100 Minus
2L 23513712 2L 16843298..16843397 1006..908 435 98 Minus
2L 23513712 2L 16850158..16850282 351..227 295 82.4 Minus
2L 23513712 2L 16854716..16854840 351..227 295 82.4 Minus
2L 23513712 2L 16849984..16850093 462..353 250 81.8 Minus
2L 23513712 2L 16854542..16854651 462..353 250 81.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:31:36 has no hits.

FMO07172.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:03 Download gff for FMO07172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13284-RB 227..1244 8..1021 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:11 Download gff for FMO07172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13284-RB 225..1242 8..1021 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:28 Download gff for FMO07172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13284-RB 227..1244 8..1021 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:28 Download gff for FMO07172.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16843281..16843394 911..1021 96 <- Minus
2L 16843513..16843961 463..910 99 <- Minus
2L 16844509..16844619 352..462 100 <- Minus
2L 16844679..16844801 229..351 100 <- Minus
2L 16846751..16846971 8..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:03 Download gff for FMO07172.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16844509..16844619 352..462 100 <- Minus
arm_2L 16844679..16844801 229..351 100 <- Minus
arm_2L 16846751..16846971 8..228 100   Minus
arm_2L 16843281..16843394 911..1021 96 <- Minus
arm_2L 16843513..16843961 463..910 99 <- Minus