FMO07173.5prime Sequence
1203 bp (979 high quality bases) assembled on 2008-10-06
> FMO07173.5prime
CAGTCGACATGGAGGACATCTTGGGCGTGCTGGGCTCGCTTTCGGACCTG
CGCAGGGAGCTCGAGGTCCTGCGCAAGGCCCACTTTGAGGAGCTGGACCA
CCTCTTCTACGGCACAGGCCAGCCGGAGGCGGAGGCCAAACCGAGGGACA
GTGCTCCGGCAGCGAAGAGTCAGGAGAACTCTTCGGTGACGCCGCAGCAA
ACGAAAAAGCGCCCCAAGCGACTCACCTCACTGGCCGAGGATCAGAATGA
GCCCGAGGCTCCAGACGCCACGGCCAACAACACGTCGGCCCGTCAAAGCA
CTCGGGTCAGCAACTCCCAGTTGCTGGCTATCGCCGAGGACGAGCACAAC
TCCACGGCCTCGCTGATGCCGCCTCCGCCTGTGCCCGTCTCGGCGGACAC
CACCCTCGGCTCCGGAAGGCCACAGCGAGCCGCTAAGCTGAAGACCGAGA
AATTACTCAAGGAGCCCTCACTCAACCGTAAGATGCGGCGGCCCAGCAGC
GAGGAGCTCGTAAAGGTCAAGGTTGAGAGCGAGCAGCGAGTCTCCCAGTT
TAACAGCTTCACCAGTGCACAGGCGTTAGAGGAAAATAAACTAGCGGAGC
CGGAACTAGAAGAGCCAGCAGCAGAAACAGCTGAGCAGCAAAAGCCTCCG
GAGGAGGCCTCAGTCACAGAGGACGTGAACACCACGAAGACACTCCGCGT
GAAGGTAAAGCGCGAGAAACTCAGTACCGAAGCAGTGCCCCCGTTAACCA
ATGCGGTCTCCACGGCAAATGTGACCACCGTCTCCTCTGTAACAACGGAG
GCAGCGCGACCGGACGATACGGTGGCCAGCAACACGACGACATCCACGGA
GGTCTCCAGATGTCCGCAGAAGAAGAAGGACGTGGAAGCCACCGACCCAT
AAGGTGGAACGATTCAGCGACCTGACAGAGCTCGCAGTCTCGTCGCGCAC
GCGCAAGTGTAGCAGCGATTCGCGACGTTCAGACGATCCATATACAGATG
CACTCGAGATCCGCCGTTGCAAGCATCATTGCTGCAGTGCTCCGCTGCTG
TCATGAAACGTGGCGATTTCCAACCCACCCTCGTACTGGTCCTGCCCCGA
CGAGCGATAGTTCATAGGACACCTGGGAATGCCATTGAGGGTCATCTCAC
ACAGGACACCCTCTGAATAGCCAGGGAACGGCTTTAACGGAGAGACACGA
GTC
FMO07173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Incenp-RB | 2459 | CG12165-RB | 124..1276 | 9..1134 | 4980 | 97 | Plus |
| Incenp-RC | 2595 | CG12165-RC | 263..1415 | 9..1134 | 4980 | 97 | Plus |
| Incenp-RA | 2699 | CG12165-RA | 124..1276 | 9..1134 | 4980 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7279106..7279831 | 258..975 | 3240 | 98.3 | Plus |
| 2R | 25286936 | 2R | 7278859..7279041 | 76..258 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 7278729..7278798 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:32 has no hits.
FMO07173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:42 Download gff for
FMO07173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Incenp-RA | 255..1407 | 1..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:34 Download gff for
FMO07173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Incenp-RA | 255..1407 | 1..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:25 Download gff for
FMO07173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Incenp-RA | 116..1268 | 1..1126 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:25 Download gff for
FMO07173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7278861..7279041 | 78..258 | 100 | -> | Plus |
| 2R | 7278721..7278797 | 1..77 | 94 | -> | Plus |
| 2R | 7279107..7280001 | 259..1126 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:42 Download gff for
FMO07173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3166226..3166302 | 1..77 | 94 | -> | Plus |
| arm_2R | 3166366..3166546 | 78..258 | 100 | -> | Plus |
| arm_2R | 3166612..3167506 | 259..1126 | 96 | | Plus |
