FMO07177.5prime Sequence
1149 bp (911 high quality bases) assembled on 2008-10-06
> FMO07177.5prime
CAGTCGACATGCACACGCAGTTGGCAGACGAGTCGTACCGCGTGGGGGAA
GCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTGGACATAGC
CAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTTCCTCTCCG
AGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCATCTTCATG
GGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGCACCAGCAA
GGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATACCATGGCG
ATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAATTGGCTTT
CCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGCATGAGAAT
CGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGCTCGCACCG
AGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGCGGTACGTC
CGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAGTATGGTGA
TGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACGTCATCATA
AGATTATTGAAGAGGCGCCAGCTCCAGGTTTGTCGGAAGATTTGCGTCGT
GAGCTGGGCGAGCTGCTGTTCGTGCAGCGAAAGCTGTGGGCTACGTAGGA
GCTGGCACCGTGGAGTTAATTCTAGACAAAGAAGATCTCTCTTTCCACTT
CATGGAATGAATACCCGCCTGCAGTGGAGCATCCTATAAACGGAAATGAT
TACGGTCACCGATTTGGTTGAATGGCAGATTCGCATTGCCGCCGGTGAGC
CATTACCCCTGAAGCATCTGAGATTACGCGGCGTGTCACGCATTTGAAGC
TCGCATTTATGCAAAAATTCTCGCGGAGGCTTCTGCCCGAACCGGACACT
GCAAATTTTGTTACTCCCCAACCATCAACACGTTCGTGTGGAAACGGTGT
CCGAAAAGGAAGAAGGGTCTGTGCACACTCGAACCATGAATTGCCAACTA
ATCGTTGGAGGCGAAACCGCACAAAGCCTAACTCATGGGTGTCGCCTGGG
TGAATATATTATATACTGTTCGGGAACAAAAAATAATTCCCACGACCTT
FMO07177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RD | 2166 | CG2118-RD | 81..1207 | 8..1114 | 4625 | 95.5 | Plus |
| CG2118-RC | 2920 | CG2118-RC | 481..1607 | 8..1114 | 4625 | 95.5 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 212..1338 | 8..1114 | 4625 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793320 | 623..8 | 3065 | 99.8 | Minus |
| 3R | 32079331 | 3R | 31792337..31792650 | 932..624 | 1165 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:49 has no hits.
FMO07177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:59 Download gff for
FMO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 203..1191 | 1..978 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:36 Download gff for
FMO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 202..1190 | 1..978 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:15 Download gff for
FMO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 203..1191 | 1..978 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:15 Download gff for
FMO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31792287..31792650 | 624..978 | 94 | <- | Minus |
| 3R | 31792705..31793324 | 1..623 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:59 Download gff for
FMO07177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27618009..27618372 | 624..978 | 94 | <- | Minus |
| arm_3R | 27618427..27619046 | 1..623 | 99 | | Minus |
