FMO07178.5prime Sequence
1242 bp (1053 high quality bases) assembled on 2008-10-06
> FMO07178.5prime
CAGTCGACATGGCAGACGAAGCGGGCAGCCAAGCCGATGGCAAGCGGCAG
TTTATCTGCGGCGTGATCGAGGGATTCTACGGCCGGCCGTGGACCACGGA
GCAGCGCAAGGACCTGTTCCGCAAGCTGAAATCCATGGGCATGGGGTCCA
GTCCTTCGTACATGTACGCACCAAAGGACGACTACAAGCACCGCGCCTAC
TGGCGAGAGCTATACACCGTTGAGGAGGCGGATCACCTTTCCAGTCTCAT
TGCAGCGGCCAAGGAGGCGGGCATCACCTTTTACTACGCGTTATCGCCCG
GGCTGGACATGACCTACAGCAGCCCCAAGGAGATCGCAACGTTGAAGCGC
AAGCTGGACCAGGTTGCGCAGTTTGGGTGTGAGGCCTACGCCCTGCTCTT
TGACGACATCGAGTCGGAGCTCTCAAAGGCGGACAAGGAGGTCTTTCAGA
CGTTTGCTAACGCGCACGTGTCGGTGACCAACGAGATATACACGCATCTG
GGCAGCCCCAGGTTTCTCTTCTGCCCCACCCAGTACTGTGCCTCGCGAGC
GGTGCCAACGGTCCAGGAATCGGAGTACCTCAATACCCTGGGCTCCAAGC
TGAACAACGAGATCGATATTTTGTGGACGGGGGATAAGGTTATCTCCAAG
AACATATCCCTTGAGTCGATTCAAGAGATTACCGAGGTGCTGCGCCGTCC
GCCGTGCATCTGGGACAATCTTCATGCCAACGACTACGACCAGAAGCGAA
TCTTCATGGGACCGTACAGCGGTCGATCGCCGGAGCTTATTCCCCACCTG
CGTGGTGTTATGACCAATCCCAACTGCGAATTCTATGGCAATTTTGTTGC
CATCCATTCGCTGGGCCTTCTGGTCGCGCTGCAGCCTGACTCGAAAGTGA
ACAGCTCGCTAAGTGCAGACATAAAACTGGAGACTGAAACGATGATGACC
TACCGGCGGAGTTTCTCTCTAAGACGTTTACCACCCACGCTTGGCTTCTC
AAAACGCCTATAACGGAGTGGCTACCGGAGTTCTTCATGAAAAGGGAGCC
TGGGACCGATCACAAGCCCAGCCTCAGGTCAAATGGTGGATGCCAATATT
CCATCATACCTCCCATAAATCCTTGCATGATCCAACACCACACAACCATT
CGACGAAGCTCAGACGTCCCCAGTTCAACTCAATTCAGCTTGGCGTAACT
TTCGCGTGTTATCCCCTTCTCTCTCCGTGAGACCTCTCATCT
FMO07178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oga-RA | 3409 | CG5871-RA | 146..1304 | 9..1156 | 5190 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21219509..21220263 | 244..996 | 3565 | 99.3 | Plus |
| 3R | 32079331 | 3R | 21219222..21219458 | 9..245 | 1185 | 100 | Plus |
| 3R | 32079331 | 3R | 21220335..21220375 | 1008..1048 | 190 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:14 has no hits.
FMO07178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:38 Download gff for
FMO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oga-RA | 137..1264 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:48 Download gff for
FMO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5871-RA | 135..1262 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:17 Download gff for
FMO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oga-RA | 137..1264 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:17 Download gff for
FMO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21219213..21219456 | 1..243 | 98 | -> | Plus |
| 3R | 21219509..21220268 | 244..1001 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:38 Download gff for
FMO07178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17044935..17045178 | 1..243 | 98 | -> | Plus |
| arm_3R | 17045231..17045990 | 244..1001 | 99 | -> | Plus |
