FMO07180.5prime Sequence
1256 bp (1038 high quality bases) assembled on 2008-10-06
> FMO07180.5prime
CAGTCGACATGGGTGTCACTGTTAAAATTCTGGTCTTGATACTGGCCATT
GCCGGTGGGCTGGTCTATAGGAATGTGACCCAACTATGGGCGGACTTGCC
CGCACCAAAGTTGGATCCCCAGGAGTGGTGGGGCGATGAGGCGCAGCCCA
AGGATTACGAGGCCTATTTGAAGAACAATTCGGAGGTGATAGGCAATAGG
CTTAGTTATCCGGATAAGACCATTGCTGATTTGAAAGAGCGTCTCAATCG
CACCCTGCGCCTTACGCCTCCGCTCGAGGGCGTGGCTTTTGAGTACGGAT
TCAATACGAATTACCTTAAGGAGGTCGTGGAGTACTGGCGCGATGACTAC
CTGCCGCGTTGGCGCGAACGCGAGGTGTTCCTTTGGCAGTTCAATCACTT
CACCACCGATATTCAGGGGCTACGCACACACTTCCTCCACCTGATGGTTT
ATGATGACAACAAAGTGGGTAAGAAACACTATCCGGTGTTGCTGCTCCAC
GGATGGCCGGGATCGGTGCGGGAGTTTTACGATTTCATACATTTGCTGCA
TCAGACCAATCTGGACAATAATAACAAGTACATCTTTAACGTCGTGGTTC
CGAGTTTACCAGGTTATGGCTGGTCACAGGGCACCTCCAGAAAAGGACTG
GGTCCCGCTCAAGTGGCGGTGATGATGAGGAATCTTATGCTGCGTTTGGG
ATACAACAAATTCTTTATCCAGGGTGGAGACTGGGGCAGCATTATTGGCA
GCAACATTGCCACCTTGTATCCGGAAAACGTGCTGGGCTACCACTCGAAC
ATGTGCAACAATTTGAGTCCGAAGTCGCTGGCTAAGGGTTTAGTGGGCCG
AATTTTGGCCAGTTTGTTTGTGCCCTCTGGCTTTGAAGATTTTCTTCTTT
CCCAAGTCTAACGAGATGAGATTACTTATGGAGGAGAGTGGCTACTTTCC
ACATCCAGGCACAAACGGAACACCATCGGAGCCGCCCTTCACGATATACC
CAGTGGGGTCTGGCCGCCTACATTCTGGAGAAGTTCTTCACGTGGACAAT
TCCAGCTACCGATTTCTTGCAGATGGAGAACTCCTTAAGCGTTCAAATGA
TGCCTGCTGGAAACTGTATGATCTACATACTGAACATTTGATACAACTTC
CAGCGTTCTCTTATGGCGAACATTGCAGCAAGGGGAACTTGCACTAGAAT
CGGGTTCACACCGAGATTCCACGTGTGATGATGTGGCCCGGTTTTTCTGA
GAGACG
FMO07180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jheh1-RA | 1486 | CG15101-RA | 35..1156 | 9..1126 | 4985 | 97.2 | Plus |
| Jheh3-RA | 1576 | CG15106-RA | 802..935 | 673..806 | 340 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18853804..18854267 | 1091..627 | 1680 | 93.6 | Minus |
| 2R | 25286936 | 2R | 18854322..18854534 | 630..418 | 1065 | 100 | Minus |
| 2R | 25286936 | 2R | 18854844..18855053 | 218..9 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 18854587..18854789 | 419..217 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 18861016..18861149 | 806..673 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:35 has no hits.
FMO07180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:44 Download gff for
FMO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh1-RA | 35..1108 | 9..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:52 Download gff for
FMO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh1-RA | 57..1130 | 9..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:27 Download gff for
FMO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jheh1-RA | 35..1108 | 9..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:27 Download gff for
FMO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18853812..18854264 | 630..1083 | 95 | <- | Minus |
| 2R | 18854323..18854533 | 419..629 | 100 | <- | Minus |
| 2R | 18854588..18854787 | 219..418 | 100 | <- | Minus |
| 2R | 18854844..18855053 | 9..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:44 Download gff for
FMO07180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14741317..14741769 | 630..1083 | 95 | <- | Minus |
| arm_2R | 14741828..14742038 | 419..629 | 100 | <- | Minus |
| arm_2R | 14742093..14742292 | 219..418 | 100 | <- | Minus |
| arm_2R | 14742349..14742558 | 9..218 | 100 | | Minus |
