FMO07182.5prime Sequence
1222 bp (530 high quality bases) assembled on 2008-10-06
> FMO07182.5prime
CAATCGACATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGC
CTTCTGGCGGCCAAATGCAATGCGACCTATGAGTACGAAGGCTGGTCGAT
TGTCCAGGAAGCGGTCTGCACCGGCGATGTGGACATACTGACGGCCATCA
TCGAAGTCCGGGATCTCCAGCGTCATGTCCAGCGGGTTACGCATGTGCCT
AAGCTGCTGCAGCACCTATTGGACGCACCAGATTTCTACATCGAGATGAA
GTGGGAATTCACCTCCTGGGTGCCTCTGATGTCGCGTCTCTGTCCCAGCG
ACACCTACAAGGTCTACAAACGGGGAGCCAACGTCCGGATAGATACCACC
CTGCTGGGCTTCGACAACAACACCTGGCAACGGGGCAATCGCTCTTACAT
CTTCTAGGGGGCCAAAGAAACTGCCACGATGATCGAGATCGATCACGATA
CAAACGAAGTAATGGTGGAGGAGATGAGCAGCGATATCGGTGATATTGTG
GCCATTCCACCAGCCTTGGGCACCGTGAGGGCGCGCCTCAATGCCCCGGT
GATCACGAACAACATCGAGATGGACAAAATTAGCTTCGAGCGCAACAAGT
GCGGCATATGGGGATGGCGTAGCGAGAAATCTGAGATGATCAACGGCTAC
AACTGCTAGGTGTATGGGGCCAGCAACGTGGAGTTTGTTACAAAGACGCG
AATGGATCACCTTAGCGAGGAGCAAATTAAGAACAAGACAGCGAGGACTC
CACTGCATAGCCTGCTGGGAATTGCTGATGAGGATTATGTGTCACCCGCT
GATGCTGCTGCGGCACTAAAAGATCGTACACCATCGCCCCGGTTGGAGGA
AGCTTCCAACGCTGGAGTTGAAATGGTGGCCGACACTCACCAGCCCCTGG
AAATCAAGCAACGGAGCTCCGCGGGAGCGTCGGGCAACAGTACTCAAAGT
CTTCTGTACTCCGGAGATATTTTACTCAGAGTTTGATCTTCACGGAGGAT
GCTGCCGTCCCATAGACCTGATCACTAGTGCATCGCTTTAGAGCCACTTA
TGGTTAGCGAGGGAGCATCCAGTCAACTGCAGGACCGGTGCTTCCACTCC
TGTACTCAGGTCCACATGCAGTCCCAGTGGTCTCAACTATAATAGCTGAC
CATGCACGTCCTGCTGTCTCGAATCAAGTGTCAAATCCGCGCCCTCCTCC
ATGTTGTAGAAGTGCTCGTCGA
FMO07182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RE | 2823 | CG15118-RE | 262..1385 | 9..1115 | 4825 | 96.4 | Plus |
| CG15118-RD | 2345 | CG15118-RD | 79..1202 | 9..1115 | 4825 | 96.4 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 262..1385 | 9..1115 | 4825 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19135939..19136255 | 731..415 | 1555 | 99.4 | Minus |
| 2R | 25286936 | 2R | 19136323..19136637 | 414..100 | 1545 | 99.4 | Minus |
| 2R | 25286936 | 2R | 19135685..19135786 | 827..726 | 495 | 99 | Minus |
| 2R | 25286936 | 2R | 19135369..19135625 | 1070..828 | 465 | 88.7 | Minus |
| 2R | 25286936 | 2R | 19136695..19136785 | 99..9 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:09 has no hits.
FMO07182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:23 Download gff for
FMO07182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 257..1352 | 1..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:32 Download gff for
FMO07182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 255..1350 | 1..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:18 Download gff for
FMO07182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 257..1352 | 1..1084 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:18 Download gff for
FMO07182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19135685..19135780 | 732..827 | 100 | <- | Minus |
| 2R | 19135939..19136255 | 415..731 | 99 | <- | Minus |
| 2R | 19136323..19136637 | 100..414 | 99 | <- | Minus |
| 2R | 19136695..19136790 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:23 Download gff for
FMO07182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15023444..15023760 | 415..731 | 99 | <- | Minus |
| arm_2R | 15023190..15023285 | 732..827 | 100 | <- | Minus |
| arm_2R | 15023828..15024142 | 100..414 | 99 | <- | Minus |
| arm_2R | 15024200..15024295 | 1..99 | 95 | | Minus |
