FMO07185.5prime Sequence
1211 bp (1019 high quality bases) assembled on 2008-10-06
> FMO07185.5prime
CAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGAAACTGCGC
GATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCCAAGCGTTC
CGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTTCCTGTTCA
TGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGGTGAAGCTG
CAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCACATCAGCGG
ACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGGCACCTACC
AATATCTGAAGAGCACTGGCCAGCTGGAAAATTTGGAGCCCGCCCATTTG
AATAATACCCCCAAAGCGGAGCGTGATTTCATATTCTACAATCGCCTGGA
AAAGACAGGAAGTCAGTCAATGACGCGACTCATCAAGCAGCTGGGTGATC
GTCTTGGATTTGACACCTACAGAAATATCGTGCGTCCCTCGAGGTCGATT
ACCGAATCCGAGGAGGATGAGAAGGATCTGGTGGAGCAGCTCTTCGAGCT
GGGGGAACACGCGGTCTACGTGGAGCACGCCAATTGGGTCAACTTCACAC
AGCACGACAGTCCGCGTCCCATCTACATCAACATGGTTCGCCATCCCATT
CAGAAGGTGATTAGTGCCTACTACTACCAACGCCATCCGCTGATCTTCGC
CCAGAGCTTGTTGCGCAATCCCAATAAGCCGATGCAGACCAAGAAATTCT
TCGACACCAACTTCAATGATTGCGTCAGAAAGCGGGTGCGCCCGCATTGT
GTTTTCGACGCACACAATCCCTTCAACGGCGATTGGAGGAGGTTCTCTCT
ACCATCTTTGTGGCAACTCGGAAATTTGCACGCATTTCAACTCGGAAACT
ACACGCAAATCGCCCAAATGAATGTGAACGGGAGTACGCCGTTGTGGGTA
GTTGGGAGGACACAATGTGACTTGGCCGTGTTAGAGCCTACATACGCGGT
TTTTTACGACGCCCCCAAATCTACTACAGCATACTGAAATTTAACGATAC
CATGTTTCGCCATGTACCCTCATCTGGATAGGATGTGGAGGGAGTATCCT
GAGAGCAGTTTCTCCTTCGAATCGAACTAATCCTGTTATCAGACACGGAC
CTCAACTGTTTAATAGACAGATCATGAAGCAATGTGCAAGCCTCTCTCCT
AGACCATTCCG
FMO07185.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pip-RF | 1441 | CG9614-RF | 180..1310 | 9..1129 | 5100 | 97.7 | Plus |
| pip-RC | 1397 | CG9614-RC | 180..497 | 9..326 | 1590 | 100 | Plus |
| pip-RM | 2975 | CG9614-RM | 180..496 | 9..325 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19307323..19307882 | 882..322 | 2755 | 99.8 | Minus |
| 3L | 28110227 | 3L | 19318784..19318951 | 264..97 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 19337342..19337430 | 97..9 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 19306971..19307102 | 1007..882 | 345 | 94.7 | Minus |
| 3L | 28110227 | 3L | 19313156..19313214 | 323..265 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:26 has no hits.
FMO07185.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:39 Download gff for
FMO07185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RF | 174..1323 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:20:42 Download gff for
FMO07185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RF | 164..1313 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:15 Download gff for
FMO07185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pip-RF | 174..1323 | 1..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:15 Download gff for
FMO07185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19306948..19307102 | 882..1028 | 92 | <- | Minus |
| 3L | 19307324..19307880 | 324..881 | 99 | <- | Minus |
| 3L | 19313156..19313214 | 265..323 | 100 | <- | Minus |
| 3L | 19318784..19318954 | 95..264 | 99 | <- | Minus |
| 3L | 19337345..19337436 | 1..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:39 Download gff for
FMO07185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19300048..19300202 | 882..1028 | 92 | <- | Minus |
| arm_3L | 19300424..19300980 | 324..881 | 99 | <- | Minus |
| arm_3L | 19306256..19306314 | 265..323 | 100 | <- | Minus |
| arm_3L | 19311884..19312054 | 95..264 | 99 | <- | Minus |
| arm_3L | 19330445..19330536 | 1..94 | 95 | | Minus |
