FMO07186.5prime Sequence
1226 bp (1034 high quality bases) assembled on 2008-10-06
> FMO07186.5prime
CAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGCAGGCGCCG
GGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGCGACCTGCG
CCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATTCATTCCCC
GCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACTTCTACAAG
ATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACGCTGGCCGT
TCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGACGAACTTC
CCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATCCGTTCCTG
GAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCACCTTAAGAA
CGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAACAAACGCG
GCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGCTCGGTGAG
GACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCCCGAAAGGT
GCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCTTTCCATCC
GACCGCAACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCTCGACGGGC
GATGATGTCTCCTCGATGAACTCCTTTGATATGGCCAGCATAGCTAGCGG
AGTGTTGGCAGATAACCTCCACAAGTCGGCCACATCGGCTAGCTCAAAGG
TTAAGGAGGCGCCTGAGCCAACCGGGAAACTTTCGACCATTTCCACCTCC
CACCAAGTGTGCTACGCAACGCTGCAGACCCAGGTCGTGGTACCCATTCC
GCTGCACGTACACCAACATTTCCGCACAGACCTCGTCGACGTGCGATGGC
GATTGCATTTCGAGTTTGTGACCACACTTTGATTGACTTTGGCATTCCGA
ATCCGGAGTCCGGCGAGCTAAAAGCACCGTCTGAAATGCCCGTGGGAGAC
GATGGTATGGATCTGCCCGTGACCGTCTACGCTGCGAATCTCTCCGGATT
TATGCTCCAAACCGACATTCACCTGCCTATAAGGCAGCTTTCTAACATTC
GTTGGGCCGCGTCCAGGTAGGCTAATCTAATCATATCTATCATATCACAC
TTGCCTAGGAATCTGCATAGACATGGCTTGATTCTCACCATGAAACGGCC
CGCGGCATCGAGACGACTCGTGGACC
FMO07186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1116-RD | 1639 | CG1116-RD | 300..1377 | 9..1082 | 5155 | 99 | Plus |
| CG1116-RA | 1570 | CG1116-RA | 297..1374 | 9..1082 | 5155 | 99 | Plus |
| CG1116-RB | 1633 | CG1116-RB | 360..1437 | 9..1082 | 5155 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5220747..5221265 | 547..1063 | 2275 | 98.5 | Plus |
| 3R | 32079331 | 3R | 5220199..5220470 | 127..398 | 1360 | 100 | Plus |
| 3R | 32079331 | 3R | 5220534..5220687 | 397..550 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 5220016..5220133 | 9..126 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:39 has no hits.
FMO07186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:47 Download gff for
FMO07186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1116-RB | 353..1437 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:20:41 Download gff for
FMO07186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1116-RC | 279..1363 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:30 Download gff for
FMO07186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1116-RB | 353..1437 | 1..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:30 Download gff for
FMO07186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5220009..5220133 | 1..126 | 96 | -> | Plus |
| 3R | 5220199..5220470 | 127..398 | 100 | -> | Plus |
| 3R | 5220536..5220685 | 399..548 | 100 | -> | Plus |
| 3R | 5220749..5221287 | 549..1095 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:47 Download gff for
FMO07186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1045731..1045855 | 1..126 | 96 | -> | Plus |
| arm_3R | 1045921..1046192 | 127..398 | 100 | -> | Plus |
| arm_3R | 1046258..1046407 | 399..548 | 100 | -> | Plus |
| arm_3R | 1046471..1047009 | 549..1095 | 95 | -> | Plus |
