FMO07187.5prime Sequence
888 bp (888 high quality bases) assembled on 2008-10-06
> FMO07187.5prime
CAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGTTAACCTGC
TCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATACTCCATGG
AATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGAAATCGAAG
AGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCAATGGATGG
TACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGGGATTATCT
CAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCTGGGATACT
CACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGCCCGAGCAC
AATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGGCAATACGG
CACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAAGACAGCCT
TCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTGGTGGCTAC
TGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGCGAATTCCT
GCCACTGATCAATAATGAGAAGAAGACCTCCAACTCCACATCTTTTAAGA
TGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCGGCGGACCCAACGAC
GATGTGATTACTCCGTGGCAATCGAGCCACTTTGGTTACTTTGACGAGAA
TATGGATGTGATTCCATTTATTAGCGACCGATTTTCACCAGCGACTCCAT
TGGCATCAGACGCTTCACGAGGCCGGCAAGCTTATCATTGTGGTCAAACC
CCATGTTCATCATCTTGCCTGGCACACGCGAAAGGGATGTCATCCACGAG
TGATATTTCCATATCTGGACGCAAGCTTTCTAGACCAT
FMO07187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppt2-RA | 1191 | CG4851-RA | 75..938 | 9..870 | 4210 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11281133..11281406 | 403..676 | 1370 | 100 | Plus |
| 2L | 23513712 | 2L | 11281470..11281667 | 675..870 | 780 | 97.5 | Plus |
| 2L | 23513712 | 2L | 11280615..11280759 | 151..295 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 11280372..11280515 | 9..152 | 720 | 100 | Plus |
| 2L | 23513712 | 2L | 11280820..11280928 | 294..402 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:36 has no hits.
FMO07187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:58 Download gff for
FMO07187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt2-RA | 69..942 | 1..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:08 Download gff for
FMO07187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4851-RA | 53..926 | 1..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:15 Download gff for
FMO07187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt2-RA | 69..942 | 1..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:15 Download gff for
FMO07187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11280366..11280515 | 1..152 | 97 | -> | Plus |
| 2L | 11280617..11280758 | 153..294 | 100 | -> | Plus |
| 2L | 11280821..11280928 | 295..402 | 100 | -> | Plus |
| 2L | 11281133..11281406 | 403..676 | 100 | -> | Plus |
| 2L | 11281472..11281671 | 677..874 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:58 Download gff for
FMO07187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11280617..11280758 | 153..294 | 100 | -> | Plus |
| arm_2L | 11280821..11280928 | 295..402 | 100 | -> | Plus |
| arm_2L | 11280366..11280515 | 1..152 | 97 | -> | Plus |
| arm_2L | 11281472..11281671 | 677..874 | 96 | | Plus |
| arm_2L | 11281133..11281406 | 403..676 | 100 | -> | Plus |
