FMO07188.5prime Sequence
881 bp (881 high quality bases) assembled on 2008-10-06
> FMO07188.5prime
CAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAGATATCCAG
GAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGCCAGGAATA
CTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCCCCATATGA
GGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAGATGAAGGT
CTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGCTTGAACAA
CACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTGGTCGTCGG
GTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCCTGGATAGT
CTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGCACGAATTT
GTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGAACCTCCAT
CTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCATTGGTTAAC
GCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTAGAAAGGCA
GATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACACCCAGGAAC
TAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCGCCCTGCAA
GTCAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTGACTAGGGAA
ATAGCATACCGCCTAGCCGTCCAAGGTCACGATGTAATGGCTCTCGTGGG
CCCCTCGAATAAGCCGCATCGGAGATGTTCAGCAAACTGGGATTCCAGGT
CATCGATCATGCTACTGGCTAAGGACGGACCCACCGGTGGGCAGTTCACA
TGGCCCGAGGCGAGCAAGCTTTCTAGACCAT
FMO07188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5783-RA | 953 | CG5783-RA | 35..890 | 9..860 | 4180 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18156341..18156568 | 215..442 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 18156077..18156284 | 9..216 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 18156852..18157099 | 617..860 | 1040 | 98.4 | Plus |
| 2L | 23513712 | 2L | 18156625..18156803 | 443..621 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:39 has no hits.
FMO07188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:17 Download gff for
FMO07188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5783-RA | 35..900 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:10 Download gff for
FMO07188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5783-RA | 35..900 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:58 Download gff for
FMO07188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5783-RA | 35..900 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:58 Download gff for
FMO07188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18156077..18156283 | 9..215 | 100 | -> | Plus |
| 2L | 18156342..18156568 | 216..442 | 100 | -> | Plus |
| 2L | 18156625..18156801 | 443..619 | 100 | -> | Plus |
| 2L | 18156855..18157110 | 620..868 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:17 Download gff for
FMO07188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18156077..18156283 | 9..215 | 100 | -> | Plus |
| arm_2L | 18156342..18156568 | 216..442 | 100 | -> | Plus |
| arm_2L | 18156625..18156801 | 443..619 | 100 | -> | Plus |
| arm_2L | 18156855..18157110 | 620..868 | 96 | -> | Plus |
