FMO07195.5prime Sequence
527 bp (527 high quality bases) assembled on 2008-10-06
> FMO07195.5prime
ACATATCGCTGGAGCAAGAGATTCTGCTTCATCCACGTTACTTTGGCCCG
CAACTGCTGGAGACCGTGAAGCAGAAACTCTACTCCGAAGTGGAGGGCAC
CTGCACGGGAAAGTACGGATTCGTGATAGCGGTGACGACGATAGATCAAA
TCGGATCGGGTGTCATCCAGCCGGGCCAGGGATTTGTGGTGTATCCGGTC
AAGTACAAAGCTATCGTCTTTCGGCCATTTAAGGGCGAAGTTCTGGACGC
AGTGGTCAAGCAGATCAACAAAGTGGGCATGTTTGCAGAGATCGGCCCGC
TGTCCTGCTTCATTTCGCATCATTCTATTCCCGCCGACATGCAGTTCTGC
CCGAATGGGAATCCGCCCTGCTATAAGAGTAAAGATGAGGATGTGGTTAT
CTCCGGAGAGGATAAGATTCGGCTGAAGATTGTGGGCACACGAGTAGATG
CCACTGGAATTTTTGCAATTGGCACTTTGATGGACGACTACTTGGGATTG
GTGTCCAACGCAAGCTTTCTAGACCAT
FMO07195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb7-RA | 759 | CG31155-RA | 99..607 | 1..509 | 2545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15222703..15223023 | 323..3 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 15222508..15222645 | 461..324 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 15222403..15222450 | 509..462 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:20 has no hits.
FMO07195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:42 Download gff for
FMO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb7-RA | 99..613 | 1..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:42:54 Download gff for
FMO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb7-RA | 46..560 | 1..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:19 Download gff for
FMO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb7-RA | 99..613 | 1..517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:19 Download gff for
FMO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15222397..15222450 | 462..517 | 92 | <- | Minus |
| 3R | 15222508..15222645 | 324..461 | 100 | <- | Minus |
| 3R | 15222703..15223025 | 1..323 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:42 Download gff for
FMO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11048119..11048172 | 462..517 | 92 | <- | Minus |
| arm_3R | 11048230..11048367 | 324..461 | 100 | <- | Minus |
| arm_3R | 11048425..11048747 | 1..323 | 99 | | Minus |
