Clone FMO07209 Report

Search the DGRC for FMO07209

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:72
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31909-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07209.5prime Sequence

407 bp (407 high quality bases) assembled on 2008-10-06

> FMO07209.5prime
CAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGGAACTTCAG
AACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTAAAAGAATT
TTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCACTACTCCCA
GCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTGAAAGCGGT
CGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTATAAATTGAA
GAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCCAAAATATT
TAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAGATTTACTG
GATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTGCAAGCTTTCT
AGACCAT

FMO07209.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 628 CG31909-RC 162..542 9..389 1905 100 Plus
CG31909-RB 555 CG31909-RB 89..469 9..389 1905 100 Plus
CG43800-RB 505 CG43800-RB 89..469 9..389 1845 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7257732..7258112 9..389 1905 100 Plus
2L 23513712 2L 7232230..7232610 389..9 1845 99 Minus
Blast to na_te.dros performed 2014-11-28 21:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6855..7002 211..353 116 55.4 Plus

FMO07209.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:36 Download gff for FMO07209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..469 9..389 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:31 Download gff for FMO07209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RA 95..478 9..392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:44 Download gff for FMO07209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..469 9..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:44 Download gff for FMO07209.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7257732..7258109 9..386 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:36 Download gff for FMO07209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7257732..7258109 9..386 100 <- Plus