FMO07213.5prime Sequence
500 bp (500 high quality bases) assembled on 2008-10-06
> FMO07213.5prime
CAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCATACGCCTTC
TTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACGACCTTGGG
AGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAAGATGGCGG
TCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCGTAATGGCG
GGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATAGCCGGATC
GATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCTGGGCGCCG
GATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCATTGGAATC
GCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGCCTTTTCGT
GGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCTATACGGCC
TCATTGTGGCCATCTATTTGTACACTAAGCTTGCAAGCTTTCTAGACCAT
FMO07213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha16-2-RA | 595 | CG32089-RA | 41..514 | 9..482 | 2370 | 100 | Plus |
| Vha16-3-RB | 633 | CG32090-RB | 219..542 | 156..479 | 380 | 75.6 | Plus |
| Vha16-3-RA | 587 | CG32090-RA | 173..496 | 156..479 | 380 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11474998..11475471 | 9..482 | 2370 | 100 | Plus |
| 3L | 28110227 | 3L | 11473558..11473881 | 156..479 | 375 | 74.4 | Plus |
| 2L | 23513712 | 2L | 10736638..10736774 | 235..99 | 220 | 77.4 | Minus |
| 2R | 25286936 | 2R | 6627477..6627556 | 475..396 | 205 | 83.8 | Minus |
| 2L | 23513712 | 2L | 10736392..10736483 | 475..384 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:29 has no hits.
FMO07213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:41 Download gff for
FMO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-2-RA | 34..521 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:34 Download gff for
FMO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-2-RA | 1..477 | 9..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:16 Download gff for
FMO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha16-2-RA | 34..521 | 1..491 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:16 Download gff for
FMO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11474991..11475478 | 1..491 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:41 Download gff for
FMO07213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11468091..11468578 | 1..491 | 98 | | Plus |
