FMO07220.5prime Sequence
572 bp (572 high quality bases) assembled on 2008-10-06
> FMO07220.5prime
CAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGCTCTTCAGG
GAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAGAAGTTGCT
AACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGTCTGCAAGG
AGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATAACTCACTT
GAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAAAAGAATAT
CGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGTCGAGGTCG
TCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACCCCGTGCGC
AACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTAATGATCAT
CAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCCCAACTTGT
CCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGGAGCAGGAG
TTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCCTCGGATGA
GGACGCAAGCTTTCTAGACCAT
FMO07220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42299-RA | 679 | CG42299-RA | 21..566 | 9..554 | 2730 | 100 | Plus |
| CG42300-RA | 726 | CG42300-RA | 71..613 | 9..554 | 2600 | 98.5 | Plus |
| cerv-RD | 1141 | CG15645-RD | 485..955 | 103..555 | 925 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15575060..15575552 | 554..62 | 2465 | 100 | Minus |
| X | 23542271 | X | 15555366..15555855 | 554..62 | 2325 | 98.6 | Minus |
| X | 23542271 | X | 15577172..15577642 | 555..103 | 895 | 79.8 | Minus |
| 3L | 28110227 | 3L | 17479760..17480055 | 260..555 | 610 | 80.4 | Plus |
| X | 23542271 | X | 15575609..15575663 | 63..9 | 275 | 100 | Minus |
| 3L | 28110227 | 3L | 17479577..17479712 | 104..239 | 275 | 80.1 | Plus |
| X | 23542271 | X | 15555921..15555975 | 63..9 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:31 has no hits.
FMO07220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:40 Download gff for
FMO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42299-RA | 21..570 | 9..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:46:44 Download gff for
FMO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42299-RA | 21..570 | 9..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:31 Download gff for
FMO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42299-RA | 21..570 | 9..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:31 Download gff for
FMO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15575061..15575550 | 64..553 | 100 | <- | Minus |
| X | 15575609..15575663 | 9..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:40 Download gff for
FMO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15469094..15469583 | 64..553 | 100 | <- | Minus |
| arm_X | 15469642..15469696 | 9..63 | 100 | | Minus |
