FMO07222.5prime Sequence
1227 bp (998 high quality bases) assembled on 2008-10-06
> FMO07222.5prime
CAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAGTAACGGGA
GCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTTTCATTTAG
ACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCAATGCCGTC
AACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTAGGAAGTCA
ATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGACGAGTCTGG
GACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGTATCCATAT
TCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACGCAATATCG
AAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAGAATATTGA
ACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGATGAAATAC
ACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATCGTATTGCC
CATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAGAGGGATGA
AAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATACAATACCAA
CGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATTGGGTTGGT
GGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTGAAGTTTTT
GGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGGGCTGAAAA
ACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGGCGATCGAA
TTTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCCCAAAGGA
TAAGTTCAGGAACTGGTCTGTGCGTTACCATGTAATGGCATGAACACGGT
TGTTGTTCCAACGCACTTCTTCAAAATCATCAATAGAGAGGATGAGTTTA
ATAGGGATATGCCCATTATGGGAAGGTTATGTTGTCCCAATGCAATGTCG
ACAGGATATGGATTTGCGCTCATTTTTAGCGATGTTCGTGATATTGAACA
CTTCCGCAGGACTCCAATTCTGTGATGGCCAGCACCGGGATCCACCTGGA
ATTGCCTGGTAAACCGCCCTCATGAACGGAATTCCAAAACCAAGCTTTCT
AAAACATTGTGGGTCGCGGTCCCAGGTAGTGCTCTATCTAACCATAGATC
TATTCCAATCACCAACGATGCACAAGG
FMO07222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tengl4-RA | 1408 | CG4683-RA | 149..1282 | 9..1140 | 5215 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10950874..10951671 | 345..1140 | 3285 | 96.9 | Plus |
| 3R | 32079331 | 3R | 10950643..10950819 | 168..344 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 10950432..10950590 | 9..167 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:12 has no hits.
FMO07222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:30 Download gff for
FMO07222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tengl4-RA | 139..1282 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:32 Download gff for
FMO07222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4683-RA | 104..1247 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:28 Download gff for
FMO07222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tengl4-RA | 139..1282 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:28 Download gff for
FMO07222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10950422..10950590 | 1..167 | 98 | -> | Plus |
| 3R | 10950643..10950819 | 168..344 | 100 | -> | Plus |
| 3R | 10950874..10951653 | 345..1122 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:30 Download gff for
FMO07222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6776144..6776312 | 1..167 | 98 | -> | Plus |
| arm_3R | 6776365..6776541 | 168..344 | 100 | -> | Plus |
| arm_3R | 6776596..6777375 | 345..1122 | 97 | == | Plus |
