FMO07224.5prime Sequence
1158 bp (1010 high quality bases) assembled on 2008-10-06
> FMO07224.5prime
CAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGAATCCTCCG
GAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGTTACGAAAA
AGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGCCAGCGCCA
AGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGGAATATACG
GCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACGATGATCGT
GGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACTATTTACAA
CTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGAGGATTCTT
CGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATTTATCACAG
TCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGAGATGGGAT
ATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCAGCAGTGCC
TACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTTATTCACGA
GCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGAAATGCCCG
GGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCATTTATGGAA
ATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCATTTTAAGAA
AATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCAGGAGTATC
GAAACAATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAGACTTCCAT
TCCGCAACATGATGTTTAAGACAATAAGGAAACAGGATGCTTCGAGGACT
GCATGCTGCTGGATTATCAGGGCTGTAATGTGGCTCCAATGGCCGTTGAT
CTTATGTACTCCATTTACATGTGATGGGGCCAGCACAGCGAAGAGAGGAG
CTGGACATTTTGTTAAACTACTACTATCCATCCTCTAGAAAACTCTCAAG
AAGATGGCTACAGATCAATGCGACGGAACAGGAATTTGGCGGAAATGAAA
CGCCAAAGAAATTAACGAGTCTACTGCTGACCCATTCCTGCCAGTTTCGA
TTATTGCCAACCTTAGTGAATTAGGTGAATTGTATGCAACGAAAAACTGC
CAGGAACC
FMO07224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13659-RA | 1301 | CG13659-RA | 21..1127 | 9..1102 | 5035 | 97.8 | Plus |
| CG31370-RB | 1408 | CG31370-RB | 682..976 | 629..921 | 380 | 76.1 | Plus |
| CG31436-RA | 1402 | CG31436-RA | 195..529 | 114..448 | 310 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25300911..25301453 | 9..551 | 2700 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25301518..25302043 | 550..1064 | 2035 | 96 | Plus |
| 3R | 32079331 | 3R | 25303208..25303502 | 629..921 | 325 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:41 has no hits.
FMO07224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:05 Download gff for
FMO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13659-RA | 14..1139 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:33 Download gff for
FMO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13659-RA | 1..1119 | 9..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:30 Download gff for
FMO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13659-RA | 14..1139 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:30 Download gff for
FMO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25300904..25301453 | 1..551 | 99 | -> | Plus |
| 3R | 25301520..25302045 | 552..1067 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:05 Download gff for
FMO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21126626..21127175 | 1..551 | 99 | -> | Plus |
| arm_3R | 21127242..21127767 | 552..1067 | 96 | -> | Plus |
