FMO07225.5prime Sequence
1209 bp (1034 high quality bases) assembled on 2008-10-06
> FMO07225.5prime
CAGTCGACATGACACTGACCCATGGAATTGCCGTGGGATGGCTGTCTCCC
TCTCTTCGACTGCTCGCATCCGACGAAAGCCCTTTGGGGGATCCCCTGAC
CATTACCCAGGCATCCTGGGTTGGATCACTTATCGGCCTAGGCTCGCTGA
CCGGCAATATAATCTTTGGACTGCTACTCGATCGATTGGGCCGTAAAGTG
TGCATGTATTTCCTGGCCATACCCAATATGATCTACTGGATCCTTATCTA
CTCCGCCCAAGACGTTACGTATCTGTATGCTGGTCGATTCCTGGCGGGAA
TGTCCGGAGGTGGCTGTTACGTCGTCTTGCCCATATTCATAGCTGAAATA
GCCGACAATAGCGTTCGGGGAGCGTTATCGTCCATGGCCATGATGTACGT
TAGCATCGGCATGATGGTTGGCTTTACATTAGCCTCGTATCTCCCGTACT
ATCTGATGCCGTGCATTATCGTTGCTCTGCCGGTGGTGTTTATGTTGTCA
GTTATTGGCTTATCGGAGACACCGCAATATTTGTTGAGACGAGGGCGCGA
TGACCAGGCCGAGAAGTCTTTCTACTTCTACAAGAACCTGACACCACCCA
CTTCCTCCGACAAGGAAGCTTCTCAGCATGACGCAGCTAAAATTGAGTTT
GACACATTTCGGCTTCAGGTGCTCAGTGGCGGCGTCACCGAGAGCATTTC
TTGGCGGGATTTCATTAACGTGCCTACACTAAAGATATTCGGCCTCATCT
TTGTACTGATCATCTGCAATCAGCTGTCAGGGAGCTTCGCCATCTTCAAC
TACACATCGCACATTTTTGCTGAGCTAGGCAACAATCTGGATCCAAACAC
CAGCACCATTGTGGTCGGAGCTGCACAGCTGGTGGGAATCTTCAGTGCTG
TCGTCCTAGTGGACAGACTGGTCGTCGTGTTCTGCTCTCACTCAATGGGT
GATGGTTTGGGTGAGCTGGCAATTGCTCTGCTCAGTGCTTCGCATCGGAT
GAGTTTCTGAACAGAATGATGGCTTCTTTGTGATCAGGTGCTGGTGCTGC
ATGCTTCCTAGGATTATAGCCTGATCTCATCATCATATGACTGCTCCCAC
CTAAATCCGCTCATGACCTCTGGACTGCCTTTAACGATTACTCTGGACTA
AGATTACCAATGATTTCCACAGAAACGACGCTGACTGTCACCAGTATTCT
ATGTTGCGC
FMO07225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14606-RB | 1863 | CG14606-RB | 150..1276 | 9..1112 | 5035 | 97.7 | Plus |
| CG14606-RA | 1925 | CG14606-RA | 212..1338 | 9..1112 | 5035 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7215505..7215859 | 714..360 | 1775 | 100 | Minus |
| 3R | 32079331 | 3R | 7215137..7215441 | 1012..715 | 1215 | 97 | Minus |
| 3R | 32079331 | 3R | 7216383..7216514 | 361..230 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 7216592..7216704 | 230..118 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 7216762..7216872 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:19 has no hits.
FMO07225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:18 Download gff for
FMO07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14606-RA | 212..1261 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:00 Download gff for
FMO07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14606-RA | 1..1050 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:34 Download gff for
FMO07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14606-RA | 212..1261 | 9..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:34 Download gff for
FMO07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7215101..7215441 | 715..1043 | 95 | <- | Minus |
| 3R | 7215505..7215857 | 362..714 | 100 | <- | Minus |
| 3R | 7216383..7216513 | 231..361 | 100 | <- | Minus |
| 3R | 7216592..7216703 | 119..230 | 100 | <- | Minus |
| 3R | 7216763..7216872 | 9..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:18 Download gff for
FMO07225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3040823..3041163 | 715..1043 | 95 | <- | Minus |
| arm_3R | 3041227..3041579 | 362..714 | 100 | <- | Minus |
| arm_3R | 3042105..3042235 | 231..361 | 100 | <- | Minus |
| arm_3R | 3042314..3042425 | 119..230 | 100 | <- | Minus |
| arm_3R | 3042485..3042594 | 9..118 | 100 | | Minus |
