FMO07227.5prime Sequence
1181 bp (1015 high quality bases) assembled on 2008-10-06
> FMO07227.5prime
CAGTCGACATGAGCTTGAGCATTGTGAGTTACTATGGCAGCCAGCAGAGC
AAGTGCGGCTACTGCGCGGGAGCGAACTGCAGCCTGTCGCACGGTATGCA
CGCGTATCAGCTGGACTGCCGGGACTATCAGGACCTCATCGATCGCGGCT
GGCGGCGGTGCGGCTACTACTGCTACAAGCTGCGCAACCAGGAGACCTGC
TGCCCCTGCTACACAATCAAATGTAATGGCCTGGAGTTCAAGCTCTCCAA
GTCGAACAAGCGCATACTTCGCCGCATAAATCGATTTTTGCGCGACGGCA
AGCGAGAGTCCAAACCGGAAGCCGGCGACGGTGACGGGGAAGCCGATGCC
GATTACGCCATAGTGGCTCCCGAGGTCACGGCCAGCGAACCGCAACCCCA
GCTGCCAGATAAGAGTCCCCCTGTTATCAATGTCGAGCAAGTTGCATCAC
TGGCAACGGCTCAGAGGAAGCCGACGAAGCAGGCAACTGCTGCCGCGGTG
GAAGCTCCTACGTTGGGGTCCAACAAATCCGCAGCACCGATCTCAAACAA
GCCGTGCAAGAAGGCCAAGCAGATGCGATTGGATCGACGGCTGGCCAAGC
TGGGAGACTCGGCCTCCTACTCAACGAAATCCCTTACCCAGGAAAAGACA
CTTCGCGACTTCTTGAACACGGACAGCGAGACAAACAAACATCGGCTAAA
GCTGCGCTTAATTCACGTCTACGACGACGAGTTCCGGCGGACCCTGCCCC
AGAGTTTTGCGCTCTATAAGAAGTATCAGATATCGATACATAATGATCCG
CCAAAGGATCAGACGCGTACAAGAGCATCTGCAGGCGACTCCCCTACAGA
ATGAGAACCCCTGGATGGTCCCGAAATGGGCTACGTTCGTTTCATCAGCA
GTACTGGCTGGACGACAGTTGATTGCGTCGCGTGATTGACATCTGCCGGG
TTGTGTAGCTCGGTGTACTTTTTCTACGATCGACTATAGCTTTTTATCGC
TGCACATATGTCACTCAAGAAATGATGTGCAGTCGCTCGGCGAGAGTGCC
TTCTCTCAGATACATATGGCTCTACATTACCTCTGTTCCAAAATGCCTCA
GTCAGTGTCCCCTTACTGCGCCGGAACTGATGCTACGGTCCGAGTTTATC
GGTAGCTAGCGACATAATACCCGCGCCTATA
FMO07227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ate1-RA | 1622 | CG9204-RA | 109..1180 | 9..1058 | 4815 | 97.7 | Plus |
| Ate1-RB | 1643 | CG9204-RB | 109..1201 | 9..1058 | 4595 | 95.8 | Plus |
| Ate1-RC | 1625 | CG9204-RC | 109..801 | 9..701 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20256690..20257125 | 528..93 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 20256431..20256608 | 706..529 | 875 | 99.4 | Minus |
| 2R | 25286936 | 2R | 20255886..20256037 | 849..700 | 660 | 98.7 | Minus |
| 2R | 25286936 | 2R | 20257196..20257282 | 95..9 | 435 | 100 | Minus |
| 2R | 25286936 | 2R | 20255649..20255812 | 1001..847 | 390 | 93.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:43 has no hits.
FMO07227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:27 Download gff for
FMO07227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..1195 | 9..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:02 Download gff for
FMO07227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 100..1186 | 9..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:04 Download gff for
FMO07227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ate1-RA | 109..1195 | 9..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:04 Download gff for
FMO07227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20256436..20256608 | 529..701 | 100 | <- | Minus |
| 2R | 20256690..20257124 | 94..528 | 100 | <- | Minus |
| 2R | 20257198..20257282 | 9..93 | 100 | | Minus |
| 2R | 20255886..20256035 | 702..849 | 98 | <- | Minus |
| 2R | 20255628..20255809 | 850..1019 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:27 Download gff for
FMO07227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16143133..16143314 | 850..1019 | 91 | <- | Minus |
| arm_2R | 16143391..16143540 | 702..849 | 98 | <- | Minus |
| arm_2R | 16143941..16144113 | 529..701 | 100 | <- | Minus |
| arm_2R | 16144195..16144629 | 94..528 | 100 | <- | Minus |
| arm_2R | 16144703..16144787 | 9..93 | 100 | | Minus |
