FMO07228.5prime Sequence
1013 bp (1013 high quality bases) assembled on 2008-10-06
> FMO07228.5prime
CAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCATCAACATG
CGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTCTACTGCCT
CCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGTAGCTCTGG
CTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGCACAGGTCG
AAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTGACGGCTAT
CAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAACAAGAAGC
TGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACAGCCACAAC
AGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGCGATGATTC
ACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTATGCTGGAC
CCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTGGCCACAAA
GGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCAGCAGCCGC
ATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGCGTTGAAAG
CTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCCGGCCGGGC
CGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTGGCCAAGAA
GCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACTGCTGGACA
TCCAGGGTGTGCCCACGTGGCGCCAGCCCTGGGAGAACGAGACCGCCGAG
AAGGGCTTCAGTGCCGGCGGCGGGAAGGCCAAGTATCGCAAATCCCTGAA
GCCCAAGTCACCCACATTATTATGCACCCGCCCAGGCGGTCAGCAAGCAG
AGCTTCCACAAGTACTTCGCGGGCAATGGCAAGCCCAAGGATTCTATGTC
ATCAAGGAGCACAGAAGAGCGCAGTTCTACAGAAACATCATCTCGGCAAG
CTTTCTAGACCAT
FMO07228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12880-RA | 1894 | CG12880-RA | 223..1214 | 7..995 | 4795 | 99.3 | Plus |
| CG31055-RB | 2018 | CG31055-RB | 1384..1466 | 89..7 | 415 | 100 | Minus |
| CG31055-RC | 2073 | CG31055-RC | 1439..1521 | 89..7 | 415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27691725..27692110 | 613..995 | 1660 | 97.7 | Plus |
| 3R | 32079331 | 3R | 27690550..27690861 | 305..616 | 1560 | 100 | Plus |
| 3R | 32079331 | 3R | 27689785..27690004 | 88..307 | 1100 | 100 | Plus |
| 3R | 32079331 | 3R | 27686184..27686266 | 7..89 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 534..592 | 124 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2476 | 471..575 | 117 | 60.2 | Plus |
FMO07228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:39 Download gff for
FMO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12880-RA | 217..1217 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:39 Download gff for
FMO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12880-RA | 217..1217 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:45 Download gff for
FMO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12880-RA | 217..1217 | 1..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:45 Download gff for
FMO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27689786..27690004 | 89..307 | 100 | -> | Plus |
| 3R | 27686178..27686265 | 1..88 | 95 | -> | Plus |
| 3R | 27690553..27690859 | 308..614 | 100 | -> | Plus |
| 3R | 27691727..27692113 | 615..999 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:39 Download gff for
FMO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23511900..23511987 | 1..88 | 95 | -> | Plus |
| arm_3R | 23515508..23515726 | 89..307 | 100 | -> | Plus |
| arm_3R | 23516275..23516581 | 308..614 | 100 | -> | Plus |
| arm_3R | 23517449..23517835 | 615..999 | 97 | | Plus |
