FMO07229.5prime Sequence
1215 bp (1007 high quality bases) assembled on 2008-10-06
> FMO07229.5prime
CAGTCGACATGGCTGCAACGCTGACGGAAGCGGGAACAGGTCCTGCGGCC
ACCAGGGAGTTCGTCGAGGGATGGACTTTGGCCCAAACTCTGGGCGAAGG
TGCCTACGGCGAGGTAAAGCTACTAATCAACCGGCAGACTGGCGAGGCTG
TGGCCATGAAAATGGTGGATCTAAAAAAACATCCGGATGCAGCGAACTCG
GTGCGAAAGGAGGTATGCATACAGAAGATGCTCCAGGATAAGCATATCCT
CCGATTTTTCGGCAAACGTTCGCAAGGCAGTGTGGAGTACATATTCCTGG
AATACGCCGCCGGCGGAGAGCTATTCGATCGAATAGAACCAGACGTGGGA
ATGCCGCAGCATGAGGCTCAAAGGTATTTTACACAGCTCCTGTCCGGACT
CAATTACCTGCATCAGCGTGGGATCGCTCATCGGGATCTGAAGCCGGAAA
ATCTGCTGCTTGACGAGCATGACAACGTGAAAATATCGGACTTTGGCATG
GCTACTATGTTTAGGTGCAAGGGCAAGGAGCGACTGCTGGACAAACGCTG
CGGCACCTTGCCGTATGTGGCGCCCGAGGTGCTACAGAAGGCATATCACG
CCCAGCCGGCGGATCTCTGGTCGTGTGGCGTTATATTGGTGACAATGCTG
GCGGGTGAGCTGCCCTGGGATCAGCCGTCCACCAATTGCACGGAGTTCAC
CAACTGGAGGGATAACGATCACTGGCAACTGCAGACTCCTTGGAGCAAAC
TGGACACCTTGGCTATTTCGCTGCTTCGCAAGCTGCTGGCCACCAGTCCT
GGCACGCGTTTGACCCTGGAGAAAACCCTGGATCACAAATGGTGCAACAT
GCAGTTTGCAGACATGAACGTTCCTATGACCTGTGGACTCGGCGGCTGCC
CTGGAGATATGCTCGCCAAAGGCTAGAGGCAGCGTCTGCAGTCTAGTTGC
CCACTTGAGCAATGGCCTGATGACTCCATCTCCGGAACTACTGCTCTCAC
CCATGCCCACATGCCCACGACGATGACTTCATGTCGACTGGGCATGCGAT
CAAGGAGATGGAGCCACGCCGACGTTGCCCAGAAGCTCCGCTCAGTTACT
CCTTCCTCACCAGCTGCTGATGAGATCCTCACTTGCTACCCGATGAACAA
CGGCAAGCTCGGTCACTATTTCCAGGTTGGGAGGAAAGTACGCAATCTTT
GGTACACCACGAATG
FMO07229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grp-RA | 2563 | CG17161-RA | 739..1903 | 8..1148 | 5035 | 96.9 | Plus |
| grp-RB | 2234 | CG17161-RB | 410..1574 | 8..1148 | 5035 | 96.9 | Plus |
| grp-RC | 2344 | CG17161-RC | 520..1684 | 8..1148 | 5035 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16691901..16692124 | 113..336 | 1120 | 100 | Plus |
| 2L | 23513712 | 2L | 16698138..16698345 | 657..864 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 16696583..16696764 | 335..516 | 910 | 100 | Plus |
| 2L | 23513712 | 2L | 16697499..16697643 | 513..657 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 16691088..16691193 | 8..113 | 530 | 100 | Plus |
| 2L | 23513712 | 2L | 16698961..16699110 | 866..1011 | 455 | 96 | Plus |
Blast to na_te.dros performed 2014-11-28 20:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 2124..2154 | 1048..1078 | 110 | 83.9 | Plus |
FMO07229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:48 Download gff for
FMO07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grp-RC | 512..1575 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:49 Download gff for
FMO07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grp-RA | 944..2007 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:31 Download gff for
FMO07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grp-RC | 512..1575 | 1..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:31 Download gff for
FMO07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16698139..16698348 | 658..866 | 99 | -> | Plus |
| 2L | 16698962..16699157 | 867..1051 | 92 | | Plus |
| 2L | 16691901..16692124 | 113..336 | 100 | -> | Plus |
| 2L | 16696585..16696762 | 337..514 | 100 | -> | Plus |
| 2L | 16697501..16697643 | 515..657 | 100 | -> | Plus |
| 2L | 16691080..16691192 | 1..112 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:48 Download gff for
FMO07229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16697501..16697643 | 515..657 | 100 | -> | Plus |
| arm_2L | 16691901..16692124 | 113..336 | 100 | -> | Plus |
| arm_2L | 16696585..16696762 | 337..514 | 100 | -> | Plus |
| arm_2L | 16691080..16691192 | 1..112 | 97 | -> | Plus |
| arm_2L | 16698139..16698348 | 658..866 | 99 | -> | Plus |
| arm_2L | 16698962..16699157 | 867..1051 | 92 | | Plus |
