FMO07230.5prime Sequence
1211 bp (1047 high quality bases) assembled on 2008-10-06
> FMO07230.5prime
CAGTCGACATGGATATTTTTGATATGGTCAAAGCGGCGCCGCCGCCGCAA
ACTATTAATCCGGTGGACACCAAGCTCTCCACTCCGTCGCCCATACCGCC
CGATTCGCCAATCGACGTAAATGACCTCCTGGAGAGTGGAAACCAATTGG
ACGAGAATGACTTGCGCATGTCGAGAAAATCAAAGAATGTCGAACAGTGC
AGCATTGATCTGTTTGATTCGGAAACATCATTCGACCATCTCGACGAGTC
ATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACCAAACAAAA
GCAGGAAATCCACTGTCTCTGCATCGACGCCGCACAACAAGAGGCCAAAA
GTGTCCATTGACGACGACGGCGAGGCCATCGAGGAGGACCAGCAATCGAT
GGTGGTCGTTCCCACCAAGACGAAGGCTCAGCAAAAGATGTTCAGCGATC
AGCAGTCGCCGAATGTTAAAAGAAAGGTGCGGGTGCTATTACGTCGCCTG
AAACAGACAGAAATCGATTCGGCCGTCGAATCTTTGGCCAATTCATCATT
TATCAATGTGCCCGAGATCGTTAACCAGAGCGGTACTAGTGGCCGTAGCA
GGCACAAAAAGAGAAAAACGTCACCTAAGAAACAAAAGTCATCAACAGCG
CAGACCAATTTCCACATCAAAGTTCCTTTGCAGAATGGCGCCAAAAAGCG
TGCTCTGAACCACTCGTTGCGCGCTCATACACCGCCGCCCAGTTTGGCCA
AGAGTTCTGAAAGCACACACTCCGCACTGAAGCGAAGTCCCAAGCCCAAG
ATCAAGGCGAAGAGATTATCCAGTCGCGGACGCAACACCGATCCGGATTT
GGTTAAGCGTTATGGCGCGCATTTCTTTGGCTGTGTGGTGAAAGTGAGGA
GGACGCGTTTACCAAGTGCCAAGTGCCTGACTGCAACCGCCTCCCATTGC
GACGAGTTGTCAGGAAGGTGTATCCCAAGAAGCGTTATCTTCAGCGAGCC
GTCGAGAATTCTGGCAGCCCCGGGGTCATCCGTCGTCTACTTTCGTTCGC
TTTCATCGGAGGGAGCTCGAACGAACCGACTGCACGGTGTGGATGCACTG
GCAAGTGCTGAAGACATAGCACTGACTCCAGGCCGCTTTCTCGTTACTTC
TGGAAGTCGCGGACCGTTAGGTCGCGGCTCATAGTCAACGATTCGCTCTT
GTTTCGCAGGA
FMO07230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP5-RC | 2159 | CG1745-RC | 292..1458 | 9..1154 | 5095 | 97.1 | Plus |
| HP5-RA | 1744 | CG1745-RA | 292..1458 | 9..1154 | 5095 | 97.1 | Plus |
| HP5-RB | 3720 | CG1745-RB | 292..1458 | 9..1154 | 5095 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11455281..11456190 | 123..1025 | 4110 | 98.6 | Plus |
| X | 23542271 | X | 11455077..11455191 | 9..123 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:31 has no hits.
FMO07230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:43 Download gff for
FMO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RB | 284..1466 | 1..1161 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:51 Download gff for
FMO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1745-RA | 267..1449 | 1..1161 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:19 Download gff for
FMO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP5-RB | 284..1466 | 1..1161 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:19 Download gff for
FMO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11455069..11455191 | 1..123 | 96 | -> | Plus |
| X | 11455282..11456341 | 124..1161 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:43 Download gff for
FMO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11349102..11349224 | 1..123 | 96 | -> | Plus |
| arm_X | 11349315..11350374 | 124..1161 | 96 | | Plus |
