Clone FMO07231 Report

Search the DGRC for FMO07231

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:72
Well:31
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9596-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07231.5prime Sequence

1176 bp (1003 high quality bases) assembled on 2008-10-06

> FMO07231.5prime
CAGTCGACATGGCCACCGAAGAGGACATCCCCAGAATCCAATTGGGCGAC
TACATCGTCATCCAGCGGCAGAAATATACGAAGCTACAAAAATTCGGCAG
TCTGGACACCACGGCCACATTGGGCAAAGAAACACTGGAGCTGAAGTCTC
TTTTGGACCAACCCTATGGCTCCACGTTCAAGATGTGCGTCAAAGAGACA
AAGCCGGGTAAAAGGGGCGCCCAGAGACAACACACCTTGGAGCTGTGCAG
CGAGACTGAGCTGAGAAGCACGCGAGAGGTTCTGGGCATCTCCAGCAGTG
GAGCGGATAATCGGGACATCCGGGATGATGGAGAAGCGCAGACCCTGAAA
CCAGAGGACATTGCGCAGCTGCGTGAGGAGTGCAACGACTCCAGCAAAAT
CATCGAGAAGCTGGTGGAGAATTCTAAGACTTTCCACAACCGAACGGAGT
ACTCCCAAGAGAAGTACCTGCTAAAGAAGGAGAAAAAGTATTTCGAGTTC
GTTCAAATCCGCCAGCCAACGATCCGTCTGATGCTGGACATCTTCTACCG
CCAAGACTCGGAAAAGGTCATGGGCATTCGCGTTGACACTTTATCGCAAA
TTATTTCTTACTCGGGCGTTTGTGGATTCGGCAGCTATCTGCTGTACGAG
AGTGGTACCAATGGTCTACTGCCGGCTGCCATGCTCAACTCTATAGGCGC
AGGCACGGAGGGCACCCTGGTGCACATGCACCCGGGCAATGTGCCCCAGA
AGCAGCGCTCTCAGCTCTGAAACTACCCCTGGAGCAGCAACAGCGATGTG
TTTCCGTTAATCTCTATTCCGTTTTAAGGGAGTTTTACCAAGGAGGGGAC
GCGAAAGCCACAGATATTCCCGTTGTGGAGCCCAGTGAAAACGAACCTCA
GAAACCCAGCTGGAGACGCCACGGAGGAACACCTGAGCGATAGACCGACC
ACAAAGAACCCAGCTGATGAGTCAAATAGTGTAGAGAAGAGCAAAGGGAC
TCCGCGCTGCATTTGAAACAGCGGGCACGCCTGATGCACGCCGATCGACG
TCTGGTGTGCCGCCAGACACCATCAACATCTGCAGCCTGCTGCCTGGACC
TCAGACTGTGTGTAATCGACTGCAGACGTTACAGACTTCATGACTGAAAC
ACCGGCAAGTGACGACTGCCACTTGA

FMO07231.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9596-RD 1613 CG9596-RD 236..1307 8..1057 4825 97.9 Plus
CG9596-RC 2175 CG9596-RC 93..1164 8..1057 4825 97.9 Plus
CG9596-RB 1470 CG9596-RB 93..1164 8..1057 4825 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6560642..6561568 931..8 4470 99.6 Minus
Blast to na_te.dros performed on 2014-11-28 22:29:09 has no hits.

FMO07231.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:23 Download gff for FMO07231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 89..1174 1..1065 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:52 Download gff for FMO07231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 38..1123 1..1065 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:51 Download gff for FMO07231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9596-RB 89..1174 1..1065 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:51 Download gff for FMO07231.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6560577..6561572 1..988 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:23 Download gff for FMO07231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6560577..6561572 1..988 98   Minus