FMO07232.5prime Sequence
1214 bp (1030 high quality bases) assembled on 2008-10-06
> FMO07232.5prime
CAGTCGACATGTGCGATCGCGTCAGAGAAGGAATCCTGGTCGGATGCGGC
AACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTCCTGCAGAA
GTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCGACACATGC
CCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTCTGGCTGGC
GGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTTCGACAGCC
CAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTACGCCAATA
TCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACTACCAGGTG
AAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACCGGCACCCA
CCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCACCATCGATC
ACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTAC
TACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGT
GGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAACCTCAGCG
CACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCGCCCTGCCT
TACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCGTTCGCCGA
GGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAAGCGACTGG
TGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCATTCTCACG
CAGGGCTGCGATCCTGTACTGCTTATACAGCAGATTCGGTGCAGGATTTC
CGGTCACGAATTGGCGGTGCATGAAATTGTCGATACCAATGGGCGCTGGG
GATGCATTCGTTGGAGGTTCCTATCGCAGTTTGTGCAAGGCAAGTCGCTG
GATGTCTGCATCAGGTGCGAAACTATGCAGCCGGGCACATTATCAGGAAT
CCAGGTTGCAAATACTCGGCGACGGGAGTTCGTGAGGCAGCCTTTCTGAC
CATCGTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCTATCATATCTAGC
AAATACCAACTAGGCTAGGATCTGCCATGACTTGGGCTTGAAATCCCAAA
TAAAGTCGGGGCACCGAGCGTCGGACATTCGAGTGGATCCTGAGGCACTA
TACAGGATTATCTG
FMO07232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AdenoK-RB | 1387 | CG11255-RB | 40..1072 | 7..1033 | 4895 | 98.7 | Plus |
| AdenoK-RC | 1847 | CG11255-RC | 252..1265 | 26..1033 | 4800 | 98.7 | Plus |
| AdenoK-RA | 1580 | CG11255-RA | 252..1265 | 26..1033 | 4800 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13021073..13021560 | 510..23 | 2440 | 100 | Minus |
| 3L | 28110227 | 3L | 13020315..13020827 | 1017..509 | 2210 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:46 has no hits.
FMO07232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:07 Download gff for
FMO07232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11255-RB | 34..1076 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:53 Download gff for
FMO07232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11255-RB | 9..1051 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:33 Download gff for
FMO07232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AdenoK-RB | 34..1076 | 1..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:33 Download gff for
FMO07232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13020315..13020826 | 510..1017 | 98 | <- | Minus |
| 3L | 13021074..13021557 | 26..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:07 Download gff for
FMO07232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13013415..13013926 | 510..1017 | 98 | <- | Minus |
| arm_3L | 13014174..13014657 | 26..509 | 100 | <- | Minus |
