FMO07233.5prime Sequence
1219 bp (1047 high quality bases) assembled on 2008-10-06
> FMO07233.5prime
CAGTCGACATGACCGAGAAGAGGGAGCGGCCGGGCCCGCTGCGCTGGCTG
AGACACCTGCTCGACCAGCTCCTGGTGCGAATCCTTAGCCTGAGCCTCTT
CCGTTCGCGCTGCGATCCGCCGCCTTTGCAGCGTTTTCCCGCAACGGAAC
TACCGCCTGCCGTCGCCGCCAAATACGTGCCCATTCCAAGGGTGAAGGGA
CTTCCGGTAGTTGGGACACTTGTGGATCTTATAGCCGCCGGCGGAGCCAC
GCACCTTCATAAGTACATCGATGCGAGGCACAAGCAGTATGGTCCCATTT
TCCGGGAGCGATTGGGCGGTACCCAGGATGCAGTGTTCGTATCGTCCGCA
AATCTCATGCGCGGAGTCTTCCAGCACGAGGGTCAGTATCCGCAGCATCC
GCTGCCGGATGCCTGGACGCTGTATAACCAGCAACATGCCTGCCAACGGG
GACTGTTCTTCATGGAGGGCGCCGAGTGGCTGCACAACCGACGCATACTT
AATCGACTGCTGCTCAACGGAAATTTGAATTGGATGGACGTGCATATTGA
GAGCTGTACCAGACGAATGGTGGATCAGTGGAAAAGACGCACTGCGGAGG
CGGCGGCGATTCCGCTAGCGGAGAGTGGTGAAATACGAAGCTACGAACTG
CCCCTGTTGGAACAACAGCTCTACCGTTGGTCCATAGAAGTTCTGTGCTG
CATCATGTTTGGCACCAGCGTGCTCACCTGCCCCAAGATCCAGTCCTCGC
TAGACTACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATAGCTCGCGA
CTGATGACATTCCCGCCTCGCTTGGCCCAGATTTTGCGCCTGCCCATCTG
GCGGGATTTCGAGGCCAATGTGGATGAGGTGCTGCGTGAGGAGCTGCCAT
AATCGATCACTGCATCAGAGTGCAGAGACCAAAGAGACCGCACGATGAGC
GCTTTACATCGCCTCAGGCGGCGATGTTGCCAGCGATATGATCAAGCGAA
ATTGTAGACTGGTCATGCAGCAGGTGAACCGACGCATTCAGCAGTCAGTG
GCTTGTTTGCCCTTTCAAAGAGCCGAGGCTCCAGCAACGACTGGCCAAAG
GAAGCGAGCTACCATGATTCGCCTGATGCCGGCCTGTATCAAGGATTCCT
GCCCTGTACTGTATCCTCATACGATATCTGGCCGAGAGACGGCCACTTGG
CGGCTACCTTTTATGCTAC
FMO07233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sad-RA | 1773 | CG14728-RA | 107..1264 | 9..1149 | 5120 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11877341..11877585 | 9..253 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 11878359..11878585 | 464..690 | 1135 | 100 | Plus |
| 3R | 32079331 | 3R | 11878655..11878972 | 689..998 | 1135 | 95.6 | Plus |
| 3R | 32079331 | 3R | 11878062..11878272 | 254..464 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 11879070..11879138 | 1033..1098 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:39:09 has no hits.
FMO07233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:41 Download gff for
FMO07233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 102..1268 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:54 Download gff for
FMO07233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 102..1268 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:47 Download gff for
FMO07233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 102..1268 | 1..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:47 Download gff for
FMO07233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11877336..11877585 | 1..253 | 98 | -> | Plus |
| 3R | 11878062..11878271 | 254..463 | 100 | -> | Plus |
| 3R | 11878359..11878585 | 464..690 | 100 | -> | Plus |
| 3R | 11878657..11879009 | 691..1031 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:41 Download gff for
FMO07233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7703058..7703307 | 1..253 | 98 | -> | Plus |
| arm_3R | 7703784..7703993 | 254..463 | 100 | -> | Plus |
| arm_3R | 7704081..7704307 | 464..690 | 100 | -> | Plus |
| arm_3R | 7704379..7704731 | 691..1031 | 94 | -> | Plus |
