FMO07238.5prime Sequence
982 bp (982 high quality bases) assembled on 2008-10-06
> FMO07238.5prime
CAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAACGCAACCGC
GAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTGAAAATGGA
TTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCTCTCCGCCG
TGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGGAGCTGGCC
AATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTGGACCGCTT
CAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTCGATGTCCA
TGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTGGAAGTCGC
AATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCCAGCGGTGG
GAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCA
TGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGC
AGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCC
GTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGC
GCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCT
TTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGC
ATTCCTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCA
GTCCCATGGTGGCTCAAGTAAATGCCAGACAAGTTCGCCAATGTGAACAT
ACCCATTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTGGATGCCG
ACGAGGTGGAGTCAAATCTGTTGGAGAACCTGGACGAGGACACCTTAACC
AGATCAAAACGCTGCACGAGAACTTGCAGATGATTGTTAATAAGCCAGCC
AGGCGGTGTTCAAAGCAAGCTTTCAGGACCAT
FMO07238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| borr-RB | 1298 | CG4454-RB | 133..1088 | 9..963 | 4710 | 99.7 | Plus |
| borr-RA | 1286 | CG4454-RA | 133..1076 | 9..963 | 4520 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9251942..9252352 | 769..359 | 2055 | 100 | Minus |
| 2L | 23513712 | 2L | 9252634..9252986 | 361..9 | 1765 | 100 | Minus |
| 2L | 23513712 | 2L | 9251682..9251876 | 963..771 | 875 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:34 has no hits.
FMO07238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:54 Download gff for
FMO07238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| borr-RB | 125..1098 | 1..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:43:58 Download gff for
FMO07238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Borr-RB | 123..1096 | 1..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:29 Download gff for
FMO07238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| borr-RB | 125..1098 | 1..975 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:29 Download gff for
FMO07238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9251672..9251876 | 770..975 | 96 | <- | Minus |
| 2L | 9251942..9252350 | 361..769 | 100 | <- | Minus |
| 2L | 9252635..9252990 | 1..360 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:54 Download gff for
FMO07238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9251672..9251876 | 770..975 | 96 | <- | Minus |
| arm_2L | 9251942..9252350 | 361..769 | 100 | <- | Minus |
| arm_2L | 9252635..9252990 | 1..360 | 98 | | Minus |
