FMO07239.5prime Sequence
1221 bp (1001 high quality bases) assembled on 2008-10-06
> FMO07239.5prime
CAGTCGACATGTCCGGAATCAACAGTCGTAATCAGAAAATGGAACAGCAG
CGCCAGCTGATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGCCGGGAAT
GGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGGATGCGCA
GCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTTCATCAGT
TCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCGGCGGCAT
CAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAACATGCGCA
GCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGATCTCATCG
CACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTGAGCAGCA
CCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAGAAACCAC
GTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGACTACACC
AATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCATGGCCTC
ATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGGACGGGGA
ACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATATCGACCAG
TTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCCGCATTAC
GCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTACTACTTGC
ATCTGGAACGTGACTACGGCAAGAGATATTTCTGCTGGGAGGTCGCAAAC
GCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATCCCACGGAT
TTGTCTCGCATGCCGATGGCTTCTGTGGCAAACTGCGCTCTAATGTCTTT
GGCACATCCTTCACGGTCTTTGACAACGGCAACAAGAAGAGCACAGAAAA
GTCCTCGACTCCGACTTGGCCGTCATCAATTATGACACTAACATTTTGGA
TTCAGGGGCCCGCACAATGACTGTTTATACTGCCCGGCATGAACTGAGAA
GATCAGCGTTCAGGATCGTTCGGGCGATCCAACGCAGGCATCTGACTATG
GAAAATGAGAACTTGACAAAACTCTTGAGCGGCAAATAAAGCAGTGTGAC
GATTAACAATGTAGTGTCTCACTTTCTAGGGGCGCGCCTCACACAGGGCG
CTCTGCGTGATGAAGCACACT
FMO07239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RB | 2496 | CG9398-RB | 649..1759 | 9..1108 | 4970 | 97.4 | Plus |
| ktub-RC | 2523 | CG9398-RC | 991..1786 | 324..1108 | 3395 | 96.4 | Plus |
| ktub-RC | 2523 | CG9398-RC | 649..964 | 9..324 | 1580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21122000..21122470 | 324..793 | 2305 | 99.8 | Plus |
| 2R | 25286936 | 2R | 21121626..21121903 | 47..324 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 21122524..21122717 | 790..984 | 785 | 96.9 | Plus |
| 2R | 25286936 | 2R | 21102576..21102617 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:57 has no hits.
FMO07239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:59 Download gff for
FMO07239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 649..1684 | 9..1042 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:10 Download gff for
FMO07239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| king-tubby-RB | 647..1682 | 9..1042 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:55 Download gff for
FMO07239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 649..1684 | 9..1042 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:55 Download gff for
FMO07239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21102576..21102617 | 9..50 | 100 | -> | Plus |
| 2R | 21121630..21121903 | 51..324 | 100 | -> | Plus |
| 2R | 21122001..21122468 | 325..791 | 99 | -> | Plus |
| 2R | 21122526..21122716 | 792..983 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:59 Download gff for
FMO07239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17009135..17009408 | 51..324 | 100 | -> | Plus |
| arm_2R | 16990081..16990122 | 9..50 | 100 | -> | Plus |
| arm_2R | 17009506..17009973 | 325..791 | 99 | -> | Plus |
| arm_2R | 17010031..17010221 | 792..983 | 96 | -> | Plus |
