Clone FMO07242 Report

Search the DGRC for FMO07242

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:72
Well:42
Vector:pMK33-CFH-BD
Associated Gene/Transcriptbcn92-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07242.5prime Sequence

302 bp (302 high quality bases) assembled on 2008-10-06

> FMO07242.5prime
CAGTCGACATGTCGACCCGTCGCCAGGCGATCACGTTATACAGGAATCTC
CTGCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATGTACGCTGC
CCGAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAGGGACTTCG
CGGAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGGAGCTGATA
CGTCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAACTGGTTAT
AGAGAACAAGAAGACCCTGAAGCCCTCGGACGACGCAAGCTTTCTAGACC
AT

FMO07242.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
bcn92-RA 748 CG3717-RA 167..442 9..284 1380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2149219..2149346 211..84 640 100 Minus
X 23542271 X 2149402..2149481 88..9 400 100 Minus
X 23542271 X 2148769..2148846 284..207 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:51:48 has no hits.

FMO07242.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:09 Download gff for FMO07242.5prime
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 163..446 1..289 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:44:12 Download gff for FMO07242.5prime
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 116..399 1..289 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:12 Download gff for FMO07242.5prime
Subject Subject Range Query Range Percent Splice Strand
bcn92-RA 163..446 1..289 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:12 Download gff for FMO07242.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2148765..2148843 210..289 97 <- Minus
X 2149221..2149341 89..209 100 <- Minus
X 2149402..2149485 1..88 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:09 Download gff for FMO07242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2042798..2042876 210..289 97 <- Minus
arm_X 2043254..2043374 89..209 100 <- Minus
arm_X 2043435..2043518 1..88 95   Minus