FMO07244.5prime Sequence
1224 bp (1016 high quality bases) assembled on 2008-10-06
> FMO07244.5prime
CAGTCGACATGCACACCAGCACGGATCCCATGCACACATTGCACGACAGC
GTCTCCCTCTCGCCGCCGCTCATCAAAAGCTCCAGAGGCGGCTCCTCCAT
CGGCAACGGAATCGGATGCAGTGCGTCCTCGCGCACTGCCGCCGCAGATG
CCATGTCCATGGGCTGCGACGACAGCGACATCGAGCCGTCGTCCATGGGC
GGAAGTGGTGCCGCCGGCGGCAACGGAGACGGCTCGGGATCTTCGGGTGG
TCCCCTGGTAAAGCCACCATACTCCTACATAGCTCTAATCACCATGGCCA
TTCTTCAGTCGCCGCACAAGAAGCTCACGCTCAGCGGGATCTGTGATTTC
ATCATGTCGCGCTTTCCATACTACAAGGACAAATTCCCCGCCTGGCAGAA
CTCCATCCGGCACAATCTCAGCCTGAACGACTGCTTCATAAAGGTGCCCC
GCGAGCCGGGAAATCCCGGAAAGGGCAACTTCTGGACGCTGGACCCGCTG
GCGAAGGACATGTTCGACAACGGCAGTTTCCTGCGCCGGCGGAAGCGCTA
CAAACGGGCGCCCACCATGCAACGCTTCTCGTTTCCGGCGGTCTTTGGCA
CGCTGTCTCCATTTTGGATCCGCAAGCCCGTGCCCCTCGTGCCAGTGCAC
TTCAACGTGCCCAACTTCAATGGGAGCAGGGAGTTCGACGTGGTCCATAA
TCCGGCGGATGTCTTTGACTCAGCGCTGCGAGCGGACAAGAAGTTTAACT
TCTTTGCGAATGCCGAAGCATCCTTCTACCAGGGAAGTCAGTCGGGGGAC
AAGTTCGACCGGCTGCCCTTCATGAATCGCGGTCGAGGAGCGGATGTCCT
GGATGCAACTACCGCACAGCAGTGGCTCCGGCGGAGGAGTAGGCGGGGAA
TCCGAGAGCAGCCGTGGCTCAAAGTACAAAAGCCAATACGCTTTCGATGT
GGCGACTGTGGCCAGTGCTGCGGGCATTCCCGGCCACAGGAATTACGCAG
AACGCTGTCCGCGGCGGTGGTACATGAATCTTCAATGTGTACATGACGAT
GCCGACACAAAGCCGATGCGGAAGCCGAGGAGATAGACGACTTCTGCAGA
AGAATCACGGGAAGCGCATGAACAGAGACTCATATCCGGACTGGTGACGG
CTGTACATTCCTGGATGGCCCCGAAGCTTAATCTTTGAGGCTCTGCGCCA
GGAGGTTCCAATACTACTAGATCA
FMO07244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd59A-RA | 2228 | CG3668-RA | 341..1430 | 6..1092 | 5015 | 97.8 | Plus |
| croc-RA | 2347 | CG5069-RA | 490..773 | 258..541 | 355 | 75.4 | Plus |
| slp1-RA | 1425 | CG16738-RA | 598..702 | 392..496 | 225 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22869174..22869896 | 361..1080 | 3080 | 97.2 | Plus |
| 2R | 25286936 | 2R | 22868499..22868854 | 6..361 | 1750 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21475707..21475990 | 541..258 | 340 | 74.6 | Minus |
| 3R | 32079331 | 3R | 25083736..25083880 | 409..553 | 215 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:39:16 has no hits.
FMO07244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:45 Download gff for
FMO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 334..1418 | 1..1080 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:44:13 Download gff for
FMO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 1972..3056 | 1..1080 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:51 Download gff for
FMO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 334..1418 | 1..1080 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:51 Download gff for
FMO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22868492..22868854 | 1..361 | 98 | -> | Plus |
| 2R | 22869175..22869896 | 362..1080 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:45 Download gff for
FMO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18756015..18756377 | 1..361 | 98 | -> | Plus |
| arm_2R | 18756698..18757419 | 362..1080 | 97 | == | Plus |
