FMO07249.5prime Sequence
917 bp (917 high quality bases) assembled on 2008-10-06
> FMO07249.5prime
CAGTCGACATGGCCAACAACGCCCGCATCGAGCACACGTCCTCCGAGGGT
CATGAAGGGGACGCCACATGCGTGGCGTACTTCGATGGACAGCTGTTCTC
CGGAGGCGCTGACGGTAAAATACGAATCTGGTCACCGGAACTGCAACTAT
TGGCCACTGTAAACGCTCACGAGGCGTACATATACTGCATGGCCATTAAT
CAGCACGGAAAGGTCTACTCGAGCAGCTGTGATGGCCAGGTTCACTTCAT
GCTGCCTCCCTATGGAGACGAGTCAGTGCAGGAACTATTCCGCTGCGACG
ACGCCATCCAGGCCATGTACTGCGACGGATCCGTGCTTTACACGGGCGAT
GACAAGGGTGTGGTGACCACTTGGACCAACGATCGCATGCTCTTCAAGTA
CAGCCTGGTGGAGGAGGTCAAGTCACTGGCCGGCGAGCAGAATCTCATTT
ACACTGTTCGCGACCTGGACGTGGTGGTGTCTCAGGTGGCGGAGGGCAAG
TCTGGAAAGTACAGCAACAAGGCGGTGATTCCAGGTAAGTCTCCGCTCCA
TCTTCTCGGGCCCATGGTGGATGGCAAGCGGAGCTATCTGGCCTTTCCCG
ATCGCTCTGGGATGGGTTTGCAACTGGTCAACAATCTTTCGCAGCAACAG
TACTCCAAAATTTGGCACTTGCCGGACTGCCATGAGTTGATCATAAACGC
CCTTTGCGGAGATGAGACCTATTTGTACTCCGGCGGCTATGACAAAAAGG
TTAAGGGATGGACCGATCTGGAAGCAGGAAAGCCAAAAGCCCTGGGCGAG
GTGGAGGTGGGCAGTTGTGTGAACAGCATTTGCTGTGGAGCCAACGACAC
GGTATACATAGCAAGCAGCGACGGATTCATTCGCAGTGCGAAGTTCGTAG
CAAGCTTTCTAGATCAT
FMO07249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14285-RA | 989 | CG14285-RA | 22..912 | 9..899 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19025294..19025843 | 126..675 | 2750 | 100 | Plus |
| 3R | 32079331 | 3R | 19025901..19026126 | 674..899 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 19025120..19025236 | 9..125 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:39:20 has no hits.
FMO07249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:46 Download gff for
FMO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14285-RA | 1..902 | 7..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:44:18 Download gff for
FMO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14285-RA | 1..902 | 7..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:52 Download gff for
FMO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14285-RA | 16..918 | 1..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:52 Download gff for
FMO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19025114..19025236 | 1..125 | 97 | -> | Plus |
| 3R | 19025294..19025842 | 126..674 | 100 | -> | Plus |
| 3R | 19025902..19026132 | 675..908 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:46 Download gff for
FMO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14850836..14850958 | 1..125 | 97 | -> | Plus |
| arm_3R | 14851016..14851564 | 126..674 | 100 | -> | Plus |
| arm_3R | 14851624..14851854 | 675..908 | 98 | | Plus |
