Clone FMO07253 Report

Search the DGRC for FMO07253

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:72
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPhax-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07253.5prime Sequence

1043 bp (629 high quality bases) assembled on 2008-10-06

> FMO07253.5prime
CAGTCGACATGCGGCGCGTTCCGCCCACGGATGCTGAAATGCAACCGAAT
CGAGCCCGTTTCAGGAAGTACAACGTGTGGGCTTCTGCCCTGCAAGAGGA
TGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCGAAGCGGTCGGG
ATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACCGGCTGAACGGC
GAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAGGACGGCGGCGA
ATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAGTCGGCCCATCA
CCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGGGTCACCGGTCA
CGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTCTGCGAGCCCAG
ACACATTCTGGACTTAAACGAAGTGGGTGAGAGAGATCCTTCGGATGTGG
CTACCGAAATGGCCAGCAAACTGTACGAGGAAAAGGACGAATTACTTGTT
CGAGTCGTGGAGGTTCTTGGCATAAATGTGTGGCTAAAGCTATACAAGGA
AACTCAGCGCATTGAAGCCGATGGCGGCATGATGATCAAAAACGGCATAC
GGAGACGTACACCAGGCGGGGTATTCCTGTTCCTAATAAAGCACCACGAT
CACATCACTCAGGAGCAGCAGATGCGCATTTTTAGTGAGGATCGCCAGAG
TCTGAGCAAGTCTCGAAAGCTGATCGAAACGTTGATGCGGGACCGTATGT
GGAAGAGTTGAAGAAGTGCCTCGCAAGCAGGTTACGGAACTGCCGACGTT
AATCAACGCAAAGAGTACTACATGCGGGGGACAAGCAAAGTGAAGATAAG
AACCGGGCAGCTTGTCAACCCGCCCCCCTCCCCTGTTGTCGCTGGAGCAT
GAGCACGACAGCCCTGGAGTACAGGACCCACGAGATCAATATAAATCTTG
GGGAAAATGCCGAACTTCCCTCCACATCCAAGCAGCGGCGGCGGCTCATG
GACGGCCGCTGAAGGATTAATCAGCTACGTACTACGACTTACT

FMO07253.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RB 1591 CG8069-RB 421..1457 9..1040 4610 96.9 Plus
Phax-RA 1533 CG8069-RA 363..1399 9..1040 4610 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114694..9115183 9..498 2435 99.8 Plus
2R 25286936 2R 9115384..9115660 591..862 1030 95.7 Plus
2R 25286936 2R 9115723..9115886 866..1029 495 92.2 Plus
2R 25286936 2R 9115238..9115330 498..590 420 96.8 Plus
Blast to na_te.dros performed on 2014-11-28 22:23:53 has no hits.

FMO07253.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:43 Download gff for FMO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 358..1402 1..1043 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:44:33 Download gff for FMO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 415..1459 1..1043 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:20 Download gff for FMO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 358..1402 1..1043 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:20 Download gff for FMO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9114689..9115183 1..498 98 -> Plus
2R 9115239..9115330 499..590 96 -> Plus
2R 9115384..9115660 591..862 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:43 Download gff for FMO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5002194..5002688 1..498 98 -> Plus
arm_2R 5002744..5002835 499..590 96 -> Plus
arm_2R 5002889..5003165 591..862 95 -> Plus