FMO07253.5prime Sequence
1043 bp (629 high quality bases) assembled on 2008-10-06
> FMO07253.5prime
CAGTCGACATGCGGCGCGTTCCGCCCACGGATGCTGAAATGCAACCGAAT
CGAGCCCGTTTCAGGAAGTACAACGTGTGGGCTTCTGCCCTGCAAGAGGA
TGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCGAAGCGGTCGGG
ATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACCGGCTGAACGGC
GAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAGGACGGCGGCGA
ATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAGTCGGCCCATCA
CCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGGGTCACCGGTCA
CGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTCTGCGAGCCCAG
ACACATTCTGGACTTAAACGAAGTGGGTGAGAGAGATCCTTCGGATGTGG
CTACCGAAATGGCCAGCAAACTGTACGAGGAAAAGGACGAATTACTTGTT
CGAGTCGTGGAGGTTCTTGGCATAAATGTGTGGCTAAAGCTATACAAGGA
AACTCAGCGCATTGAAGCCGATGGCGGCATGATGATCAAAAACGGCATAC
GGAGACGTACACCAGGCGGGGTATTCCTGTTCCTAATAAAGCACCACGAT
CACATCACTCAGGAGCAGCAGATGCGCATTTTTAGTGAGGATCGCCAGAG
TCTGAGCAAGTCTCGAAAGCTGATCGAAACGTTGATGCGGGACCGTATGT
GGAAGAGTTGAAGAAGTGCCTCGCAAGCAGGTTACGGAACTGCCGACGTT
AATCAACGCAAAGAGTACTACATGCGGGGGACAAGCAAAGTGAAGATAAG
AACCGGGCAGCTTGTCAACCCGCCCCCCTCCCCTGTTGTCGCTGGAGCAT
GAGCACGACAGCCCTGGAGTACAGGACCCACGAGATCAATATAAATCTTG
GGGAAAATGCCGAACTTCCCTCCACATCCAAGCAGCGGCGGCGGCTCATG
GACGGCCGCTGAAGGATTAATCAGCTACGTACTACGACTTACT
FMO07253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RB | 1591 | CG8069-RB | 421..1457 | 9..1040 | 4610 | 96.9 | Plus |
Phax-RA | 1533 | CG8069-RA | 363..1399 | 9..1040 | 4610 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9114694..9115183 | 9..498 | 2435 | 99.8 | Plus |
2R | 25286936 | 2R | 9115384..9115660 | 591..862 | 1030 | 95.7 | Plus |
2R | 25286936 | 2R | 9115723..9115886 | 866..1029 | 495 | 92.2 | Plus |
2R | 25286936 | 2R | 9115238..9115330 | 498..590 | 420 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:53 has no hits.
FMO07253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:43 Download gff for
FMO07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 358..1402 | 1..1043 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:44:33 Download gff for
FMO07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RB | 415..1459 | 1..1043 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:20 Download gff for
FMO07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 358..1402 | 1..1043 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:20 Download gff for
FMO07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9114689..9115183 | 1..498 | 98 | -> | Plus |
2R | 9115239..9115330 | 499..590 | 96 | -> | Plus |
2R | 9115384..9115660 | 591..862 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:43 Download gff for
FMO07253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5002194..5002688 | 1..498 | 98 | -> | Plus |
arm_2R | 5002744..5002835 | 499..590 | 96 | -> | Plus |
arm_2R | 5002889..5003165 | 591..862 | 95 | -> | Plus |