FMO07254.5prime Sequence
1216 bp (1044 high quality bases) assembled on 2008-10-06
> FMO07254.5prime
CAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCAAGGCCTCC
CAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCGGAGTTCAA
CGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGGACGGTATC
AAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCAGCGGTGCT
ATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGATCACTGGTG
CACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGAGTGGCGGG
ACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGACGTTCAGC
AACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGACTGGTCAGC
TTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAACGGCTGGA
GTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACCACAACTGG
GTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTGGGTCGTGT
GACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGACTCCTACG
GTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCCTGGGACGT
CTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTTATCATGTC
CGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCCTCAAATTA
TCGGCATGGAAATCTCGCGGGAGGAGGACCGGAGTCGAATTGCCTTCTTC
CAGAGCTGCGGCTGGTCCATCGGCACCACCCTAATGCCTCTGCTGTACTG
GTGGCTACGCCACTGGGACTCCTTCATGTGGCTCACCTCGATACCCACAG
CGATGGTTCTGCTTTTTTCCAAATACGTCATCGAATCGCCTCGATGGGTG
ATTAGCAAACAGCGCTTCCGCGAGGCCATTGTCCAACTGCAGAAGATAGC
CAAATTAACGTCATCGCTCGACATGACCGAAAGAATTGCGAAATCTAAGT
CGGACAAGCAGACGTCCCCTATGCATGCGTCGCTCTTTGCTGTGGCGGCT
TAACGCCACACCACCATCATGGATAACTGTCGTGCCGACTCTATCCGCGT
GTTCTTCAGTTCCCATGCCGCATCGTTCCGAACTATTTAACCAGAACCTG
AGTGAATTGAACTAGC
FMO07254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7084-RE | 2809 | CG7084-RE | 846..1974 | 9..1122 | 5200 | 98.1 | Plus |
| CG7084-RF | 3810 | CG7084-RF | 1258..2386 | 9..1122 | 5200 | 98.1 | Plus |
| CG7084-RC | 2460 | CG7084-RC | 497..1625 | 9..1122 | 5200 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22300339..22300646 | 9..316 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 22301464..22301641 | 596..773 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 22301228..22301392 | 431..595 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 22301705..22301862 | 773..930 | 760 | 98.7 | Plus |
| 3R | 32079331 | 3R | 22300704..22300819 | 317..432 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 22302047..22302159 | 923..1032 | 400 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:41 has no hits.
FMO07254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:57 Download gff for
FMO07254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7084-RB | 474..1619 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:44:35 Download gff for
FMO07254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7084-RA | 348..1493 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:44 Download gff for
FMO07254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7084-RC | 490..1635 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:44 Download gff for
FMO07254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22300332..22300646 | 1..316 | 98 | -> | Plus |
| 3R | 22300704..22300819 | 317..432 | 100 | -> | Plus |
| 3R | 22301230..22301392 | 433..595 | 100 | -> | Plus |
| 3R | 22301464..22301640 | 596..772 | 100 | -> | Plus |
| 3R | 22301705..22301854 | 773..922 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:57 Download gff for
FMO07254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18126054..18126368 | 1..316 | 98 | -> | Plus |
| arm_3R | 18126426..18126541 | 317..432 | 100 | -> | Plus |
| arm_3R | 18126952..18127114 | 433..595 | 100 | -> | Plus |
| arm_3R | 18127186..18127362 | 596..772 | 100 | -> | Plus |
| arm_3R | 18127427..18127576 | 773..922 | 100 | -> | Plus |
