FMO07260.5prime Sequence
1214 bp (1041 high quality bases) assembled on 2008-10-06
> FMO07260.5prime
CAGTCGACATGGCGGCAATGAGTGCGGATATTGTGCCCATGGAACAAGTG
AGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAGCGCGATGA
TGAGTACAGGAATCGGATCATGAAAATACGTAGACTTGATACACAAGCAA
AACATTCACATGGATTTCTCTATTCGGACGAGGAAATCAGCGATAAGGCA
TCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTTGTGATAAT
GACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCAGGAGTACG
AGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCGGTGCCAAG
GGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTATGCCCGTGT
GGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGTTCTCACAA
AGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATCGGGTATCA
AATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCGACCAG
GCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCGGCATTTGC
ATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGCAGGTTCAA
CTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGTGTGGAAAT
CAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGCCGCGGAGG
CAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCGAAAGGAGA
ACAGAAGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGGTGATTGGCGATT
CGCCGGCTGCCCTCCAACTGCGCTACCTTCAGACACTCAACACCATATCT
GCGGAGAAGAACTCGACGATTGTGTTCCCGCTGCCCATCGATTTAATACA
TATTTCCTGAAGACAACGAGCCACAACGCAGCAAATGCCCGAGCAGCTGC
GCAGCAATTGGCAACCCACCGCCGCCATGCAACTGGCGCCGCACAGCGGA
TGGGCAGCAGCACAGTCGCAGTTACAAATGCCGCAGCAGCCGCAGTCGCA
ATACATCGCAGCATCAACACAGCAGCAGCGCAAGCGGACAACGAGAATCA
ACTTATCACTGGACGCGATCTCTACGCATGCAGCTTCTAACACTTCGTTG
GCGCCGCGCGCACC
FMO07260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42540-RB | 3219 | CG42540-RB | 80..1214 | 6..1129 | 5170 | 97.7 | Plus |
| CG42540-RI | 3899 | CG42540-RI | 780..1894 | 26..1129 | 5070 | 97.7 | Plus |
| CG42540-RK | 3887 | CG42540-RK | 780..1882 | 26..1129 | 4880 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4586578..4586785 | 439..646 | 1040 | 100 | Plus |
| 3L | 28110227 | 3L | 4589787..4589967 | 701..882 | 860 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4590026..4590253 | 877..1095 | 570 | 92.5 | Plus |
| 3L | 28110227 | 3L | 4578760..4578871 | 175..286 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 4563796..4563896 | 26..126 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 4580074..4580161 | 355..442 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 4579445..4579521 | 283..359 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 4588066..4588124 | 642..700 | 295 | 100 | Plus |
| 3L | 28110227 | 3L | 4577916..4577952 | 138..174 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1505..1565 | 948..888 | 115 | 69.4 | Minus |
FMO07260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:01 Download gff for
FMO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RB | 77..1159 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:08 Download gff for
FMO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32245-RC | 77..1159 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:57 Download gff for
FMO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RB | 77..1159 | 1..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:57 Download gff for
FMO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4556163..4556186 | 1..26 | 92 | -> | Plus |
| 3L | 4563797..4563904 | 27..138 | 93 | -> | Plus |
| 3L | 4577917..4577952 | 139..174 | 100 | -> | Plus |
| 3L | 4578760..4578869 | 175..284 | 100 | -> | Plus |
| 3L | 4579447..4579519 | 285..357 | 100 | -> | Plus |
| 3L | 4580077..4580159 | 358..440 | 100 | -> | Plus |
| 3L | 4586580..4586783 | 441..644 | 100 | -> | Plus |
| 3L | 4588069..4588124 | 645..700 | 100 | -> | Plus |
| 3L | 4589787..4589967 | 701..882 | 99 | -> | Plus |
| 3L | 4590032..4590208 | 883..1050 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:01 Download gff for
FMO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4588069..4588124 | 645..700 | 100 | -> | Plus |
| arm_3L | 4589787..4589967 | 701..882 | 99 | -> | Plus |
| arm_3L | 4590032..4590208 | 883..1050 | 93 | -> | Plus |
| arm_3L | 4556163..4556186 | 1..26 | 92 | -> | Plus |
| arm_3L | 4563797..4563904 | 27..138 | 93 | -> | Plus |
| arm_3L | 4577917..4577952 | 139..174 | 100 | -> | Plus |
| arm_3L | 4578760..4578869 | 175..284 | 100 | -> | Plus |
| arm_3L | 4579447..4579519 | 285..357 | 100 | -> | Plus |
| arm_3L | 4580077..4580159 | 358..440 | 100 | -> | Plus |
| arm_3L | 4586580..4586783 | 441..644 | 100 | -> | Plus |
