FMO07266.5prime Sequence
1224 bp (1040 high quality bases) assembled on 2008-10-06
> FMO07266.5prime
CAGTCGACATGCCCAGTGAAAATCATCTGCATCACCATCACTTGGGACAC
ACTGGTGGATTATCTCCGCATCATCATCACTTGTTGGACACATCCTGCAG
CAATACGGGAATCACTGTGACAGAACATCATCATGGTCTCGACTTGACCA
CCACACTGCGCAGTGAACTGGCTGCGTTGTCCTACAAAAAGGAGCGACTT
ACGGGGGAGCTTGCTGAAGCGCGTGCAGCATTGTGCAGCAAAGATGCGGA
TATCGAGAATCTGCGAGCCCAGGCTGCTCGGCAGACTGCCCTCATCGGAT
CCCTCCAGAGTCGTCTGCAAAACTCGGAGAGCAGGGAGCAGGCTGTCCAG
GCCCGATGTGATTCCACCATTCAGACGGTGCAGCGGGAGAAGCGTAGCTC
CGACGAGCGCAACAAAGAGCTAATCTGCAAGATACAGCATCTGGAAACGC
ATATGGCCAGTGAGGAATCGCAAAAGGAGCAGATCAAGGCTCAGCTGCAC
GATCTCCTGCGACGCCTTAGCATCACTTTGGGAATGGATGTGTGCGATGG
CAATCAGAATTCCCATGCCACACCCGAGTGCATCATCTCGCGGGCCGAGG
AGGTGATGGTGGAGCTGCAAAGGACGAAAGCCAAGGTCAGTTCCACCTGC
GACACGCTCAGCTCCTGCGAAAATGAACTGCTCAACTTGAAGTCGCTGGC
CAACATTGAGAAGCAGCGGCTCACGGCCCAACTTGATGGAGCTGGCAATC
ACAACCACGAGTTGGAAGGACGCTGTCGCCAATACGAAAGGGATCTTCAG
ATCCAAAGAGATCGCTTGACTGAATCGGAAATCAACGGCGAGAAGCTCAA
GGAAGAGCTGCGCGGCTTTGAGTCGCGATGCCATCGTTTGCAAAACAACC
TGACCGGACTCAGGCGATCGTCTGCAGTCTTGCGGGGATTGAGCAATCTC
TTGAATGTTCCCGAACCGTGCGAACCCCTCATCAAGGACAAGCTGAAGAG
AGATCTGGCGGAGACCAGCCATGCATGCCGCAAATGCCCTCCCCTGCAAA
TCAGCTGACCCGAGCATGAAAAGCTTAAGAAACCCAACGAACCACGATTC
CGCCTCCGTTCTGGCAGCTCAGAAATGTGAGCTACTGGAGCGCCTTGGAA
GTCCATGCGAATCTATCCTAGCGAGATACCATTGGTCATCGGAGTTTCTC
TGCAAGACACTGTCCTCTCGCGAT
FMO07266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RA | 2631 | CG43338-RA | 78..1228 | 9..1149 | 5100 | 97.2 | Plus |
| CG43338-RB | 2694 | CG43338-RB | 217..1291 | 85..1149 | 4735 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18668576..18669367 | 996..208 | 3780 | 99.4 | Minus |
| 2L | 23513712 | 2L | 18669438..18669562 | 209..85 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 18669888..18669966 | 87..9 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:38 has no hits.
FMO07266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:48 Download gff for
FMO07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..1228 | 9..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:45:00 Download gff for
FMO07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-RA | 74..1224 | 9..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:23 Download gff for
FMO07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..1228 | 9..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:23 Download gff for
FMO07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18668541..18669365 | 210..1030 | 98 | <- | Minus |
| 2L | 18669438..18669563 | 84..209 | 99 | <- | Minus |
| 2L | 18669892..18669966 | 9..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:48 Download gff for
FMO07266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18668541..18669365 | 210..1030 | 98 | <- | Minus |
| arm_2L | 18669438..18669563 | 84..209 | 99 | <- | Minus |
| arm_2L | 18669892..18669966 | 9..83 | 100 | | Minus |
